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51 protocols using mowiol 4 88

1

Visualizing Inflammatory Response in hPdLFs

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To visualize the inflammatory response of hPdLFs, the activation of THP1 monocytic cells was analyzed as previously described [40 (link)]. CMFDA (Thermo Fisher Scientific, Carlsbad, CA, USA)-stained THP1 cells were added to each well of stimulated hPdLFs. After the removal of non-adherent cells, the remaining adherent cells were fixed for 10 min in 4% paraformaldehyde (PFA). DAPI (1:10,000 in PBS) staining was used to visualize cell nuclei. Membrane cut-outs were embedded with Mowiol® 4-88 (Carl Roth, Karlsruhe, Germany) on glass object slides.
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2

Histological Analysis of Choroid Plexus in Lateral Ventricles

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The Plexus choroidei of the lateral ventricles were removed from the brains together with attached ependymal and subependymal tissue and fixed in 4% paraformaldehyde for 24 h. After being rinsed in PBS, the samples were further dissected and placed in 30% (w/v) sucrose for another 24 h for cryoprotection. The fixed samples were frozen in isopentane-nitrogen-cooled TissueTek® (Sakura, Staufen, Germany) and stored at −80 °C before being cryosectioned at 18 μm.
Next, cryosections were rehydrated and washed in PBS for 10 min before being incubated in blocking solution containing PBS, 4% (v/v) goat serum (Biochrom, Berlin, Germany), 0.1% (v/v) bovine serum albumin (Roth, Karlsruhe, Germany) and 0.1% (v/v) Triton® X-100 (Roth, Karlsruhe, Germany) for 90 min at room temperature.
Afterwards, sections were incubated with primary antibodies (Table 1) diluted in the preincubation solution overnight at 4 °C in a humidified chamber. After washing with PBS three times for 10 min, the secondary antibodies (Table 1) were applied for 90 min at room temperature. Afterwards, sections were stained with the nuclear stains DRAQ5 (1:1000; Thermo Fisher, Waltham, MA, USA) or DAPI (1:1000) and washed with PBS three times for 10 min before being mounted with Mowiol 4–88 (Roth).
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3

Fluorescent Stem Cell Detection Protocol

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For the fluorescent detection of stem cells, the trimmed tissues were briefly washed with PBS, embedded in Optimal cutting temperature media (OCT), sectioned at 20 µm using a Leica CM 1850 cryostat and collected on poly-l-lysine-coated glass slides. The nuclei were stained with Blue pseudocolor (DRAQ5®), slides were mounted with an antifade-aqueous medium (Mowiol 4-88-Carl Roth) and stored in dark until analysis.
Samples were analyzed using a Zeiss LSM 710 Confocal Laser Scanning unit (equipped with Ar and HeNe lasers) mounted on an Axio Observer Z1 Inverted Microscope. Images were recorded using a Plan Apochromat 63 × oil immersion objective and further animalized and processed using the standard Zeiss ZEN software [9 (link)].
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4

Cryosectioning and Histological Staining of Tissue Biopsies

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For fluorescence images, fresh tissue biopsies were snap-frozen in Tissue-Tek (VWR) immediately after removal. Serial 12 μm cryosections were prepared with a microtome and fixed with ice-cold acetone for 10 minutes. Sections were mounted using Mowiol 4–88 (Roth) and phase contrast and fluorescence micrographs were taken on an ApoTome.2 (Zeiss) equipped with a Plan-Apochromat 63×/1.40 Oil DIC M27 objective and an EC Plan-Neofluar 10×/0.30 Ph 1 objective.
For histological stainings, fresh tissue biopsies were fixed over night using 4% formaldehyde and embedded in paraffin. 5 μm sections were prepared with a microtome and stained with hematoxylin-eosin. Micrographs were taken on an Eclipse 80i microscope (Nikon).
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5

Immunofluorescence Staining of Macrophages

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Macrophages were seeded at a density of 105 cells per glass coverslip (12-mm diameter) and fixed for 10 min in 3.7% formaldehyde, washed three times in PBS, and permeabilized for 10 min in PBS containing 0.1% TritonX-100. After three washes with PBS, cells were incubated for 30 min in blocking solution (2% BSA or 2% normal human serum in PBS), washed briefly in PBS, and incubated for 60 min in the primary antibody solution. Cells were washed three times in PBS and then incubated for 30 min in secondary antibody solution. After three washes in PBS, coverslips were mounted on glass slides with Mowiol 4–88 (Roth) containing p-phenylenediamine (Sigma-Aldrich). Images of fixed samples were acquired with a confocal laser-scanning microscope (Leica DMi8 with a TCS SP8 AOBS confocal point scanner) equipped with an oil-immersion 63× HC PL APO Oil CS2 NA 1.40 objective and Leica LAS X SP8 software.
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6

Odorant Screening in Cellular Assay

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The following chemicals were used: Dulbecco’s MEM medium (#F0435), FBS superior (#S0615), L-glutamine (#K0282), penicillin (100U/ml)/streptomycin (100U/ml) (#A2212), trypsin/EDTA solution (#L2143) (Biochrom, Berlin, Germany), MEM non-essential amino acid solution (100x) (#M7145, Sigma-Aldrich, Steinheim, Germany), Gibco® HAT supplement (#21060-017, Thermo Fisher, Dreieich, Germany),CaCl2*2H2O (#22322.295), D-glucose (#101174Y), dimethyl sulfoxide (DMSO) (#83673.230), HEPES (#441476L), potassium chloride (#26764.230), and sodium hydroxide (#28244.295) (VWR Chemicals BDH Prolabo, Leuven, Belgium), sodium chloride (#1064041000, Merck, Darmstadt, Germany), D-luciferin (beetle) monosodium salt (#E464X), HaloTag® Alexa Fluor® 488 Ligand (#G1001, Promega, Madison, USA), Dynasore (#2897, Tocris Bioscience, Bristol, UK), Hoechst33342 (#1399, Invitrogen, Eugene, USA), Mowiol 4-88 (#0713, Carl Roth GmbH + Co. KG, Karlsruhe, Germany), Paraformaldehyde (PFA) (#18814, Polysciences Inc., Warrington, USA).
Odorants were purchased from Sigma-Aldrich (Steinheim, Germany), Alfa-Aesar (Karlsruhe, Germany) and Chemos GmbH (Regenstauf, Germany) (Table S1).
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7

Characterization of Bioprinted Tissue Sections

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Bioprinted constructs were fixed in 3.7% formalin (Sigma), embedded in paraffin, and sliced into 10 μm thick sections. After deparaffinization, antigen retrieval was performed in Tris-EDTA (10 mM Tris Base, 1 mM EDTA, pH 9.0) at 95 °C for 30 min. Cells were permeabilized using 1% Triton-X-100 for 15 min, and blocking was performed for 30 min using 5% goat serum. For the characterization of nuclear damage, γH2AX (anti-γH2A.X (phosphor S139), Abcam, ab11174, 1:1000, Berlin, Germany) was used. For the cellular characterization of epithelial cells, pan-cytokeratin (anti-pan Cytokeratin, abcam, ab27988, 1:250) was used. This was followed by incubation with corresponding secondary antibodies (Alexa Fluor 546- or 488-conjugated anti-rabbit or anti-mouse IgG(H+L) (A11005, Thermo Fisher Scientific, Waltham, MA, USA; 1:2000). Nuclear counter-staining was performed with DAPI (Sigma), and slides were mounted in Mowiol 4–88 (Roth). The slides were analysed by fluorescence microscopy (Zeiss Observer, Z1 microscope, Carl Zeiss, Zeiss, Germany).
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8

Immunofluorescent Staining of Osteocytes

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MLO-Y4 cells or primary osteocytes (PO), cultured on collagen-coated coverslips, were washed with PBS and then fixed in 4% PFA for 12 min. Next, fixed cells were washed three times with PBS, permeabilized with 0.15% Triton X100 in PBS for 10 min and washed three times with PBS. After blocking for 30 min, the cells were incubated with primary anti-GαQE antibody for 1 h and after washing, the cells were incubated with secondary antibody together with 565-phalloidin (Sigma Aldrich, Taufkirchen, Germany) for 1 h. The nuclei were stained with DAPI. After mounting, the cells with Mowiol 4-88 (Carl-Roth, Karlsruhe, Germany) microscopic pictures were obtained.
To ensure the successful isolation of primary osteocytes, E11-staining was performed. Therefore, the cells were fixed at day 7 after isolation with 4% PFA for 10 min, washed two times with PBS, blocked with 10% goat serum for 45 min at room temperature and incubated with the primary anti-podoplanin antibody (Santa Cruz Biotechnology, Heidelberg, Germany) at 1:50 in PBS plus 3% goat serum overnight at 4 °C. The secondary antibody Alexa Fluor 488-labeled goat anti-hamster IgG (Molecular Probes, Eugene, OR, USA) was used at 10 µg/mL for 45 min at room temperature. Nuclei were stained with DAPI and afterwards mounted with Mowiol 4–88.
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9

Immunostaining of GlyR Receptors

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To stain GlyR surface receptors, GlyRα1 variants, and pDsRed-Monomer-Mem [Takara Bio (formerly Clontech), Mountain View, CA, United States] were co-transfected into HEK293 cells. All steps were performed at room temperature. After fixation for 20 min with 50 μl 4% paraformaldehyde, 4% sucrose solution, cells were washed three times with PBS and blocked for 30 min with 5% (v/v) goat serum in PBS. Afterward, cells were incubated for 1 h with the GlyRα1-specific primary antibody mAb2b (1:500 in blocking solution; epitope amino acids 1–10 of mature GlyRα1; Synaptic Systems, Göttingen, Germany). Cells were washed three times with PBS and incubated for 45 min with the secondary Alexa488-coupled goat-anti-mouse antibody (1:500 in blocking solution; Dianova, Hamburg, Germany). Then, cells were washed three times with PBS, incubated for 5 min with DAPI (1:5000 in PBS; Thermo Fisher Scientific, Waltham, MA, United States) and mounted on glass slides with Mowiol 4-88 (Carl Roth, Karlsruhe, Germany). Imaging was performed using an Olympus IX-81 inverted fluorescence microscope (Olympus, Tokyo, Japan).
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10

Immunofluorescence Staining Protocol for Cellular Visualization

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For immunofluorescence staining, cells were washed with PBS followed by fixation with either 4% paraformaldehyde in PBS for 15 min (followed by permeabilization with 0.2% Triton X-100 in PBS for 5 min) or cold methanol (for centrosome visualization) for 10 min at –20°C. After blocking with 2% bovine serum albumin (BSA) in PBS for 30 min. The cells were then incubated with primary antibodies in PBS with 1% BSA for 2 h. Cells were washed three times with PBS (10 min each time) and incubated with a secondary antibody in PBS with 1% BSA for 1 h. After three additional washes with PBS, the coverslips were mounted on slides with mounting medium (Mowiol 4-88, Carl Roth). For confocal microscopy, the samples were imaged using a Carl Zeiss LSM880 Airyscan system with a 63× /1.4 NA or 100× /1.4 NA oil objective lenses and 405-, 488-, or 543-nm lasers.
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