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17 protocols using collagenase 1 solution

1

Isolation and Culture of Renal Tubular Cells

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Kidney fragments from WT or CalpTG mouse have been incubated in 1 mg/ml collagenase 1 solution (Gibco, Life technologies) for 3 mn at 37 °C. Tissue was passed in 100 µm and 40 µm sieves to collect renal tubular cells. Cells were grown in a specific medium to promote tubular cells growth and differentiation containing HAM’s F12 and DMEM medium, insulin 5 µg/ml (I1882, Sigma), dexamethasone 5.10−8 M (D8893, Sigma), selenium 60 nM (S913, Sigma), transferrin 5 µg/mL (T1428, Sigma), triiodothyronine 10−9 M (T5516, Sigma), EGF from mouse 10 ng/mL (E4127, Sigma), HEPES 20 mM (15630-056, GIBCO), Glutamine 2 mM (25030024, Gibco), 2% Fetal calf serum (Invitrogen), and 0.5% D-Glucose (Sigma).
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2

Rodent Stroke Model: Ischemic and Hemorrhagic

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Stroke lesions were made by injecting 1.5 μL of 27.4 or 40 mg/ml N5-(1-lminoethy)-L-ornithine (L-NIO) for ischemic strokes and 0.5 μL of 0.1 Units of Collagenase 1 solution (Gibco, Cat #17018-029) for hemorrhagic strokes at 0.15 μL/min. Injections were made to target the striatum at 1mm Anterior-Posterior (A/P), +2.5 mm Medial-Lateral (M/L) and 3 mm Dorsal-Ventral (D/V) from Bregma using a borosilicate pulled glass micropipette and a 10 μL Hamilton needle mounted to a syringe pump. Micropipettes were allowed to dwell in the brain for 4 minutes after the completion of the injection volume prior to slow removal from the brain using the stereotactic device. The skin was sutured with polypropylene sutures (UNIFT 6-0 #S-P618R13) after the injection and allowed to recover for 48 hours.
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3

Isolation of Porcine Fibroblasts from Skin Biopsy

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Porcine fibroblasts were obtained from a skin biopsy of an adult female hybrid minipig. Briefly, skin was cut in small pieces and incubated in Collagenase I solution (Gibco; 1 mg/mL) in PBS (phosphate-buffered saline, Sigma-Aldrich, Madrid, Spain) at 37 °C for 1 h. After enzymatic digestion, skin pieces were mechanically disaggregated, filtered through a 40-µm cell strainer, washed with PBS, and centrifuged at 600 g for 6 min. Isolated cells were cultured on gelatin-precoated flasks (0.1% gelatin (Sigma-Aldrich) at 37 °C for at least 30 min. Culture media components: DMEM High Glucose, 15% fetal bovine serum (FBS), 1% Glutamax, 1% NEEA, 1% antibiotic/antimycotic solution, and 0.1 mM β-mercaptoethanol. The day after seeding, the medium was replaced to remove all non-attached cells. Every 3–4 days (80% confluence), cells were split using TrypLE™. All of the above-mentioned reagents were obtained from Gibco (Thermo Fisher Scientific, Madrid, Spain).
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4

Establishment of Primary Human Osteosarcoma Cells

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Primary human OS cells from Dr. Ji at Nanjing Medical University 37 (link), 38 (link) were derived from two written-informed consent OS patients. Patients received no chemotherapy and radiotherapy before surgery. OS tumor tissues were washed, minced, and incubated in collagenase I solution (Gibco, Boston, MA). Cell pellets were isolated and cultured in described medium 39 (link). Primary OS cells were named as pOS-1 and pOS-2. The established human OS cell lines, U2OS and MG-63, were purchased from Cell Bank of Shanghai Institute of Biological Science (Shanghai, China). The primary human osteoblasts were provided by Dr. Ji as well 40 (link), 41 (link). Human osteoblasts were differentiated and cultured as described 42 (link), 43 (link). The protocols of using primary human cells were approved by IACUC and Ethics committee of Nanjing Medical University.
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5

Isolation of Human Adipose Stem Cells

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hASCs were isolated from lipoaspirate by the enzymatic digestion method. In brief, liquid adipose tissue was washed with phosphate buffer saline (PBS) supplemented with 100 U/ml penicillin, 100 mg/ml streptomycin, and 0.2 mg/ml amphotericin-B (Sigma–Aldrich). Washing of the sample was followed by enzymatic digestion with the collagenase-I solution (Gibco, USA) in low glucose Dulbecco's modified Eagle's medium (LG-DMEM; Sigma Aldrich, USA). After centrifugation at 1200 rpm for 5–7 min, the resulting stromal vascular fraction (SVF) was passed through a 100 μm cell strainer.
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6

Adipose-Derived Stem Cell Isolation and Analysis

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The isolation, differentiation, and Oil Red O staining of hADSCs or mADSCs were conducted as described in our previous study34 (link). Briefly, 12 g of fresh abdominal SATs were isolated from four normal BMI (18.5–23.9) patients and iWAT was isolated from C57BL/6 male mice (n = 4). Adipose tissues were washed in phosphate buffer saline (PBS) three times and the tissue was subsequently cut into 1 mm × 1 mm size, followed by incubation in collagenase I solution (Gibco, Life Technology, China) for 1.5 h at 37 °C. The digested tissue mixture was filtered using a 70 µm cell strainer (BD Falcon, Becton Dickinson, Franklin Lakes, NJ, USA), centrifuged at 150 × g for 10 min and then the supernatant was poured off. Erythrocyte lysate (3 ml; Beyotime Institute of Biotechnology, Shanghai, China) was added into the sample for 3 min at room temperature, centrifuged at 150 × g for 10 min again, and the precipitate was washed by PBS thrice. Finally, the sample was cultured in Dulbecco’s modified Eagle medium/F12 (Life Technologies, Carlsbad, CA, USA) and supplemented with 10% fetal bovine serum (Life Technologies). The cellular lipid droplets content was extracted by 100% isopropanol and absorbance quantification was detected by using a spectrometer at 520 nM (Multiskan FC; Thermo Fisher Scientific, Inc., Waltham, MA, USA).
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7

Extraction and Analysis of Glomerular Proteins

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Mouse kidneys were extracted, minced, and digested in 2 mg/ml collagenase I solution (Gibco) in RPMI-1640 (Invitrogen) at 37 °C for 5 min. Extracts were then filtered through a 70-µm cell strainer and once more through a 40-µm cell strainer. The homogenates were centrifuged at 720 g for 10 min. Isolated glomeruli were then collected in RIPA extraction buffer (20 mM Tris–HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA 1% NP-40, 1% sodium deoxycholate, 2.5 mM sodium pyrophosphate, 1 mM β-glycerophosphate, 1X Protease inhibitor cocktail (BioBasic)) for protein extraction and processed for immunoblots. Anti-mouse Alk1 (R&D systems), anti-beta actin (Santa Cruz Biotechnology) and peroxidase-labeled secondary antibodies (Vector Laboratories) were used for detection.
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8

Isolation and culture of primary mouse podocytes

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Magnetic beads infused-mouse kidneys were extracted, minced, and digested in 2 mg/ml collagenase I solution (Gibco) in RPMI 1640 (Invitrogen) at 37 °C for 3 min, then filtered through a 70-µm cell strainer and once more through a 40-µm cell strainer. The homogenate was centrifuged at 720×g for 6 min and the cells were plated. Podocyte primary cultures consisted of freshly isolated glomeruli plated in 6-well dishes in RPMI 1640 (Invitrogen) supplemented with 10% fetal calf serum (Biowest) and 1% penicillin–streptomycin (Invitrogen). Purity of culture of differentiated primary podocytes was verified as previously described13 (link), 69 (link) and shown in Supplementary Fig. 3b. Podocyte primary cultures used in this study was always P0. The outgrowth of podocytes started between days 2 and 3. Podocyte outgrowth area was quantified at day 4 using ImageJ software. Differentiated podocytes were exposed to HB-EGF (10 ng/ml, Preprotech), AG1478 (1 µM, Calbiochem), anti-mIL-6 monoclonal antibody MP5-20F3, monoclonal rat IgG1, κ isotype control immunoglobulin (both functional grade purified, 10 µg/ml, eBiosciences), Stattic (2 µM, Calbiochem), or recombinant IL6 (10 ng/ml, Preprotech) for 16 h. After stimulation, podocytes were scrapped in Phosphosafe buffer (Novagen) for protein extraction or in Trizol (Invitrogen) for total RNA extraction.
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9

Adipose-Derived Stem Cell Differentiation

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The hADSCs were isolated from adipose tissue, cultured for differentiation, and stained with the Oil Red O according to our previous study.31 (link) Briefly, 10 grams of fresh SATs were washed in physiological saline (PBS) three times, cut into a size of 1 mm × 1 mm, and digested in collagenase I solution (Gibco, Life Technology, China) for 1 hour at 37°C. After that, the mixture was filtered through a 70-µm cell strainer (BD Falcon, Becton Dickinson, Franklin Lakes, NJ, USA) and centrifuged at 150× g for 10 minutes. Next, the supernatant was gently poured off and the cells were combined with 3 mL of erythrocyte lysate (Beyotime Institute of Biotechnology, Shanghai, China) and then incubated for 3 minutes and centrifuged at 150× g for 10 minutes to collect the cells. The cells were washed with PBS three times through centrifugation at 150 g for 10 minutes each and finally cultured in DMEM/F12 (Life Technologies, Carlsbad, CA, USA) and supplemented with 10% fetal bovine serum (FBS; Life Technologies). The mature adipocytes that were induced from MSL hADSCs were stimulated by 1 μM, 5 μM, or 10 μM of isoprenaline (Hefeng Pharmaceutical Co., Ltd., Shanghai, China).
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10

Adipogenic Differentiation of hADSCs

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Approximately 10g of SATs were first washed with phosphate buffer saline (PBS) for three times. Then the sample underwent fragmentation into fragments less than 1 mm3, and digested at 37°C with 0.1% (w/v) collagenase I solution (Gibco, Life Technology, China) for 1.5 hours. The digestion was terminated with DMEM/F12 (Gibco, Life Technology, China) and filtered by 100μm cell strainer (NEST Biotechnology Co., Ltd., China), centrifuged at 800 rpm for 5 min, gently poured out the supernatant. Subsequently, 3mL red blood cell lysis buffer (Merck, China) was used to remove red blood cells, and after centrifuged at 800 rpm for 5 min again, the isolated cells were suspended in DMEM/F12 supplemented with 10% fetal bovine serum (FBS, Gibco, Life Technology, Australia), 100U/mL penicillin and 100 μg/mL streptomycin were added to the culture medium. The cells were then incubated at 37°C in an environment containing 5% CO2. In order to induce the hADSCs differentiated to adipocytes, when hADSCs grew to almost 100% confluency, the hADSCs were cultured in complete DMEM/F12 medium which contained 1μM dexamethasone, 10μM insulin, 0.5mM isobutylmethylxanthine (IBMX), and 200μM indomethacin (four reagents were purchased from Merck, China); the culture medium was replaced every 48 hours.
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