The largest database of trusted experimental protocols

76 protocols using em 109

1

TEM Analysis of Nanoparticles in MCF-7 Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
TEM analyses of NPs were performed by means of a transmission electron microscope (Zeiss EM109), prepared by slow evaporation of one drop of aqueous solution of the NPs placed on a formvar/carbon-coated copper mesh grid and air-dried. For ex vivo analyses, small portions of MCF-7 tumour samples were fixed in 2.5% glutaraldehyde in 0.1 M phosphate buffer, pH 7.2, for 2 h. After one rinsing with phosphate buffer, specimens were post-fixed in 1.5% osmium tetroxide for 2 h, dehydrated by 70, 90 and 100% ethanol, and embedded in epoxy resin (PolyBed 812 Polysciences Inc., USA). Ultrathin sections were examined by the Zeiss EM109 microscope.
+ Open protocol
+ Expand
2

Exosome Characterization by Electron Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Exosomes were fixed in 2% paraformaldehyde (PFA) solution and applied on Formvar-carbon coated grids (TAAB Laboratories). Samples were washed with PBS and fixed for 5 min with 1% glutaraldehyde. Fixated grids were washed with deionized water and subsequently contrasted for 5 min with an uranyl-oxalate solution (4% uranyl acetate, 0.15 M oxalic acid, pH 7, Sigma-Aldrich). At the end, grids were air dried for 10 min and examined under a Zeiss EM 109 with an accelerating voltage of 80 kV. For immunogold staining, 5 μl of resuspended paraformaldehyde fixed exosomes were transferred on glow discharged Formvar-carbon coated nickel grids. After washing with PBS, the grids were incubated for 3 min with 50 mM glycine/PBS. The specimens on the grids were permeabilized with 0.1% saponin for membrane protein labeling before they were washed and blocked with 0.5% BSA. Exosomes were incubated with the following monoclonal primary antibodies: mouse anti CD9 (clone HI9a, antibodies-online, 1:10), mouse anti CD81 (sc-166,029, Santa Cruz, 1:20) and mouse anti CD90 (clone 5E10, BD, 1:40), washed and labeled with a goat anti mouse secondary antibody conjugated to 10 nm gold particles (EM.GMHL10, BBI Solutions, 1:15). Grids were contrasted as described above. Observations were carried out with a Zeiss EM 109 with an accelerating voltage of 80 kV (Zeiss Oberkochen, Germany).
+ Open protocol
+ Expand
3

Pterobdella Ultrastructure Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
A single Pterobdella specimen for TEM microscopy was initially preserved in 3% glutaraldehyde buffered with 0.1 M phosphate and 0.3 M sucrose (pH 7.8). Samples were washed in 0.1 M sodium cacodylate with 24% sucrose and post-fixed with 1% OsO4 in 0.1 M sodium cacodylate for 1 h. Samples were stained in 3% uranyl acetate in 0.1 M sodium acetate buffer for 1 h, dehydrated in ethanol and embedded in Spurr’s resin. Thick sections (0.4 μm) were stained with methylene blue and examined using a Nikon E80i microscope, while thin sections (70 nm) were stained with lead citrate and examined using a Zeiss EM 109 transmission electron microscope.
+ Open protocol
+ Expand
4

Ultrastructural analysis of plant root

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ultrathin sections of the root were mounted on copper grids and contrasted with uranyl acetate and lead citrate [37 (link)] for observation with a transmission electron microscope (Carl Zeiss, EM109, NTS GmbH, Oberkochen, Germany).
Stem surface micromorphology was analyzed. The fragments fixed in Karnovsky’s solution were dehydrated with alcohol and acetone. Next, the preparations were critical-point dried in liquid CO2, sputter-coated with gold-palladium, and observed with SEM (Zeiss Supra 55VP, Carl Zeiss, Oberkochen, Germany). SEM micrographs were taken with a digital camera (Olympus SP350, 8.0 MP, Tokyo, Japan). SEM and TEM studies were performed at Centro Integral de Microscopía Electrónica (CIME-CONICET, Tucumán, Argentina).
+ Open protocol
+ Expand
5

Ultrastructural Analysis of HUVEC-Astrocyte Co-culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
We checked for the presence of two crucial ultrastructural markers: the presence of HUVECs and astrocytes as a single layer, and the presence of tight junctions (sites of apparent fusion between two adjacent cells formed by the two opposite membranes and characterized by electron-dense material). After four days of coculture, specific polycarbonate membranes were removed from the inserts and specimens were fixed in 2,5% EM grade glutaraldehyde (Fluka Chemie, AG Buchs CH) in 0.05 M phosphate buffer (PB) pH 7.4, postfixed in 1% osmium tetroxide (EMS, Fort Washington, PA, USA) in 0.05 M PB, dehydrated in graded acetone and embedded in Spurr epoxy resin (EMS, Fort Washington PA USA). Thin sections 1 μm thick were counterstained with toluidine blue and observed under optic microscope. Ultrathin sections (500 Å thick) of selected areas including HUVECs/astrocytes monolayers were harvested on 200 mesh copper grids (EMS), stained with uranyl acetate and lead citrate, and viewed under an electron microscope (Zeiss EM 109, Germany).
+ Open protocol
+ Expand
6

Ultrastructural Effects of Antibiotics on K. pneumoniae

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyze the action of antibiotics on K. pneumoniae isolates, these isolates were subjected to different sub-MICs of ampicillin, amoxicillin, ceftazidime, cefotaxime, aztreonam, and imipenem (Sigma-Aldrich) at 37°C for 6 hours, according to the origin and susceptibility profile of each isolate, using clinically relevant concentrations (Tables 1 and 2) [25 (link), 26 (link)]. In all the processes, a control for the isolate was included under the same conditions and at the same dilutions, without the presence of the antibiotic. After growth, the bacterial cells were centrifuged and fixed using 2.5% glutaraldehyde and 4% paraformaldehyde (Sigma-Aldrich). The cells were postfixed in 1% osmium tetroxide and then contrasted in 5% uranyl acetate (Electron Microscopy Science). Dehydration was carried out using acetone (Sigma-Aldrich) followed by infiltration and embedment of the material in epon 812 resin (Electron Microscopy Science). The samples were viewed under a transmission electron microscope (Zeiss EM109).
+ Open protocol
+ Expand
7

Ultrastructural Analysis of Intestinal Epithelium

Check if the same lab product or an alternative is used in the 5 most similar protocols
Changes in the tight junctions and microvilli of the small intestine were evaluated using transmission electron microscopy (TEM). The jejunum samples in the 10 groups were separated and fixed immediately with 50% glutaraldehyde and 8% paraformaldehyde, postfixed with 2% osmium tetroxide, and embedded in resin (EM-bed 812, Araldite 502, DDSA DMR 30, Electron Microscopy Sciences, Hatfield, PA, USA). Ultrathin sections were cut and stained with uranyl acetate and lead citrate. The samples were examined using a transmission electron microscope (EM 109, Zeiss, Jena, Germany) and analyzed with the aid of an electron microscope image analyzer (iTEM, Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
8

Perfusion and Fixation of Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were anesthetized and transcardially perfused according to local institutional guidelines in three steps essentially as described by Forssmann et al. (1977 (link)) with 3% paraformaldehyde, 3% glutaraldehyde, 0.5% picric acid in 0.1 M sodium phosphate buffer, pH 7.4 for 10 min. After dissection, organs were fixed in the same solution for additional 2 h at 4°C followed by 2 h post-fixation in buffered 2% osmium tetroxide at 4°C. Afterward, they were embedded in Araldite. For light microscopy, semithin sections were stained with Richardson’s blue (1% w/v methylene blue, 1% w/v Azur II) for 3 min, 80°C. For electron microscopy using a Zeiss EM 109, ultra-thin (60–80 nm) sections (stained for 40 min in uranyl acetate and 7 min in lead citrate) were prepared.
+ Open protocol
+ Expand
9

Ultrastructural analysis of acidic HOS cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HOS cells cultured under acidic (pH 6.5) or standard (pH 7.4) conditions were washed in PBS and fixed with 2.5 % glutaraldehyde in 0.1 M cacodylate buffer pH 7.4 (Sigma) for 30 min at R°T, scraped, and pelletted at 1,300 g for 20 min. Pellets were further fixed for 2 h. After washing in 0.1 M cacodylate buffer, samples were post-fixed with 1% osmium tetroxide in cacodylate buffer (Sigma) for 1 h at 4°C, dehydrated, and embedded in Epon resin. Ultrathin sections were stained with tannic acid, uranyl acetate and lead citrate, and observed with a Zeiss EM 109 transmission electron microscope. Image were captured using a Nikon digital camera (Dmx 1200F) and the ACT-1 software.
+ Open protocol
+ Expand
10

Visualizing Yeast-Derived Viral Capsids

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeast-produced VLP preparations (20 μl) were diluted 1/10, adsorbed onto a carbon-coated copper grid, and incubated for 5 min. The grids were then dried using filter paper, negatively stained with 3% phosphotungstic acid (PTA) for 5 min, and viewed using a transmission electron microscope (Zeiss EM 109) operating at 80 kV.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!