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69 protocols using cm1520

1

Histological Analysis of Brain Samples

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For histological studies, the brains isolated from experimental animals were fixed in a 10% formalin solution for 24 h at room temperature. For the next 24 h, the samples were placed in a 15% sucrose solution followed by incubation in a 30% sucrose solution for 24-48 h. After that, the brain was placed on a platform of freezing sliding cryostat Leica CM1520 (Leica, Germany) and gradually filling with cryogel (Leica, Germany) at 30° C. Next, the sample was cut into 10 μm thin coronal sections. Every fifth section was mounted on a glass slide and dried in the air for 24 h. The sections were then stained by the hematoxylin-eosin method [83 (link)]. Then, the sections were dehydrated in alcohols of upward concentration, purified in xylenes and embedded in a mounting medium (Consul-Mount, USA). The samples were examined using a Zeiss Primo Star light microscope (Germany) with integrated an Axio CamMRc camera (Zeiss, Germany).
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Histological Analysis of Mouse Brains

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Mouse brains were surgically removed from the skull and placed in a 10% formalin solution at room temperature for 24 h. Next, the brain samples were incubated in a 15% sucrose solution (24–48 h) and then stored in a 30% sucrose solution for 24–48 h. Each brain was then placed in a Leica CM1520 freezing sliding cryostat (Leica, Wetzlar, Germany), progressively filled with Cryogel (Leica, Wetzlar, Germany) and sliced into 10 µm coronal sections. Every fifth brain section was mounted on a glass slide, air-dried for 24 h, and stained with hematoxylin–eosin (PanReac AppliChem, Darmstadt, Germany). The brain sections were dehydrated in increasing concentrations of alcohol, purified in xylene, and embedded in mounting medium (Thermo Fisher Scientific, Waltham, MA, USA). The resulting samples were examined with a Zeiss Primo Star light microscope (Zeiss, Oberkochen, Germany) with an integrated Axio CamMRc camera (Zeiss, Oberkochen, Germany).
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3

Preparing SNpc Brain Sections

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Once the perfusion was completed, the brains were immediately removed and post-fixed for 24 h at 4 • C in 4% paraformaldehyde. After this, they were placed in 30% sucrose solution in 0.1 M PBS under the same storage conditions. Subsequently, brains were cut in 35 μm-thick serial sections in a cryostat (Leica CM1520, Leica Inc., Germany) in coronal plane to obtain a representative sample of all levels of the SNpc.
The 35 μm slices were collected starting from the anterior-most portion of the SNpc and sequentially placed with a soft-bristled brush inside a sterile 24-well box (Nalgene), previously filled with 0.1 M PBS. Sections were placed one by one in six series; this allowed 9-10 representative sections of SNpc to be obtained for each well. The tissue was stored in cryoprotective solution at -20 • C until used.
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4

Post-fixation Substantia Nigra Sampling

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Brains were collected, postfixed for 48 h with 4% PFA at 4°C and then immersed in 30% sucrose solution prepared in 0.1 M PBS. A total of 54 mesencephalon coronal slices of 35 μm thickness in coronal plane distributed in 6 batches were collected by a cryostat (Leica CM1520, Leica Inc., Germany). Each series correspond to a representative sample, around 17% of substantia nigra total. The collected substantia nigra (considering SNpc, SNcd, SNpr and VTA) corresponds to interaural coordinates (4.20 mm to 2.96 mm) [24] and this tissue was used in immunostaining procedures.
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5

Transcardial Perfusion and Tissue Sectioning

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The animals (n=7/group) were anesthetized intraperitoneally 40 mg/kg pentobarbital sodium (JW Pharmaceutical Co., Ltd., Seoul, Korea) and perfused transcardially with 0.1 M phosphate-buffered saline (PBS, pH 7.4, Sigma-Aldrich, St. Louis, MO, USA) followed by 4% paraformaldehyde (Sigma-Aldrich) in 0.1 M PBS (pH 7.4, Sigma-Aldrich). The brains were removed and post-fixed with the same solution for 6 h. The tissues were cryoprotected by infiltration with 30% sucrose (Sigma-Aldrich) overnight. The brain tissues were then frozen and sectioned (30 µm) with a cryostat (CM1520, Leica Microsystems, Wetzlar, Germany), and consecutive sections were collected in six-well plates containing 0.1 M PBS.
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6

Visualizing Spinal Cord nNOS and mGluR2/3

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Mice were deeply anaesthetized with isoflurane, and perfused with a buffered 10% formaldehyde solution (Mildform 10N; FUJIFILM Wako). The spinal cords obtained from the lumbar enlargements were collected as soon as possible. The tissues were immersed in the same fixative at 4°C for 4 h or overnight, and equilibrated in 20% sucrose overnight at 4°C before cryoprotection. Sections with a thickness of 10 μm were prepared using a cryostat microtome (CM1520, Leica Microsystems), mounted on APS‐coated slide glasses (S8441; Matsunami, Osaka, Japan), and stored at –70°C until use. Sections were washed three times with 0.1 M PBS (pH 7.6) for 10 min, then treated with 2% goat serum for 60 min. The sections were primarily incubated with a goat anti‐nNOS antibody (1:100, ab1376; Abcam, Cambridge, UK) and a rabbit anti‐mGluR2 and anti‐mGluR3 antibody (1:100, ab6438; Abcam) for 2 days at 4°C. After washing, sections were secondarily incubated with a donkey anti‐goat IgG H&L conjugated with Alexa Fluor488 (to visualize nNOS; 1:1000, ab150129; Abcam), and a donkey anti‐rabbit IgG conjugated with rhodamine (to visualize mGluR2 and mGluR3; 1:2000 AP182R; EMD Millipore, Burtlington, MA, USA) overnight at 4°C. After washing, the sections were mounted using a medium containing DAPI (H‐1200; Vector Laboratories, Burlingame, CA, USA).
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7

Kidney Lipid Quantification After UUO

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Seven days after UUO, the left kidney was obtained and transversally dissected. One-half of the kidney was fixed by immersion in near-freezing 2-methyl butane, covered with a cryoprotectant solution, and mounted on specimen holders. Next, the kidneys were cut into serial sections of 8 µm on a cryostat at −20 °C (CM-1520; Leica Microsystems, Nussloch, Germany) and later mounted on glass coverslips for staining. Kidney morphology was evaluated with hematoxylin and eosin (H&E) [5 (link)] and lipid accumulation with Nile red staining [18 (link)]. For Nile red staining, sections were washed with PBS pH = 7.4 and incubated for 10 min in darkness with 2.5 µg/mL Nile red dissolved in PBS with 1% acetone; Vectashield® was used as a mounting medium. The photomicrographs were taken using a Cytation 5 Cell Imaging Multi-Mode Reader (BioTek Instruments, Inc., Winooski, VT, USA). Nile red quantification was performed using Fiji [19 (link)] by ImageJ software (National Institutes of Health, Bethesda, MD, USA, https://imagej.nih.gov/ij/index.htm, accessed on 20 July 2022) according to a previously reported protocol [18 (link)].
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8

Mouse Brain Tissue Preparation for Analysis

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All mice were anesthetized by a single intraperitoneal injection of 60 mg/kg pentobarbital sodium (JW Pharm. Co., Ltd., Republic of Korea). They were transcardially rinsed with 0.1 M phosphate-buffered saline (PBS, pH 7.4) (Sigma, St. Louis, MO, USA) and fixed with 4% paraformaldehyde (Sigma, St. Louis, MO, USA) in 0.1 M PBS (pH 7.4) (Sigma, St. Louis, MO, USA). Their brains were removed and postfixed with the same fixative for 5 h, and the brain tissues were cryoprotected by infiltration with 30% sucrose (Sigma, St. Louis, MO, USA) for 8 h. The brain tissues were then frozen and transversely sectioned into 30-μm thickness in a cryostat (CM1520, Leica Microsystems, Wetzlar, Germany).
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9

Quantifying Epidermal Thickness in Frozen Skin

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Frozen sections of dorsal skin tissues were embedded in the Optimal Cutting Temperature compound (Bright Cryo-M-Bed; Bright Instruments, Luton, United Kingdom) and were stored at −80°C for further processing. Next, 10 µm of frozen skin samples were sectioned with a cryostat (CM1520; Leica Microsystems, Wetzlar, Germany). Then, skin sections were stained with hematoxylin and eosin (H&E) following standard protocols. Sections were imaged and captured with the ProGres Microscope Camera (Jenoptik, Jena, Germany) with exposure settings of 1.5 ms, light at 7.0, and magnification at ×10. Epidermal thickness (µm) was quantified with ImageJ software (v.1.32; National Institutes of Health, Bethesda, MD, USA) and was measured between the epidermal surface and the epidermal–dermal junction, excluding the rete ridges. The average thickness was determined over an average of 6–10 sections/animal. For each skin section, we measured the whole length of the skin where possible (hence, at ×10 magnification, they were determined by ≥3–4 images). For each image, we took 8 points distributed evenly over the epidermis and averaged them. Hence, the data presented here is the value of average epidermal thickness/percentage of area coverage.
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10

Imaging Renal Iron Deposition with RhoNox-4

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RhoNox‐4 (FerroOrange) was obtained from Goryo Kayaku. Kidneys of A/J and C57BL/6J mice were dissected 6 hours after a single Fe‐NTA i.p. injection (5 mg iron/kg). The kidney tissues were embedded in plastic cryomold filled with Optimal Cutting Temperature compound (Sakura Finite Japan) immediately after excision, using dry ice acetone. Frozen sections were cut using cryostat (Leica, CM1520). Then, the detection was performed as described25 by applying Rhonox‐4 on the frozen kidney sections, which were observed with a fluorescence microscope (BZ‐9000, Keyence). The intensity of fluorescence was evaluated by ImageJ.
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