The largest database of trusted experimental protocols

Nanophotometer n60

Manufactured by Implen
Sourced in Germany, United States

The NanoPhotometer N60 is a compact, high-precision spectrophotometer designed for accurate measurement of small sample volumes. It features a micro-volume cell holder and provides reliable absorbance readings in the UV-Vis range.

Automatically generated - may contain errors

110 protocols using nanophotometer n60

1

Automated DNA Isolation from Blood

Check if the same lab product or an alternative is used in the 5 most similar protocols
DNA isolation from peripheral blood from all patients was performed using automatic equipment and a commercial kit based on magnetic beads separation. Total genomic DNA quantification was carried out using an N60 Implen Nanophotometer. Samples showing aberrant protein (260/280) and organic compounds (230/260) ratios were discarded or purified.
+ Open protocol
+ Expand
2

Genome-Wide DNA Methylation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following the manufacturer's instructions, 900 ng of high-quality genomic DNA was bisulfite converted using the EZ DNA methylation kit (D5001, Zymo Research Corporation). Illumina incubation conditions were used to increase the efficiency and reproducibility of the bisulfite conversion. Quality control/quantification of bisulfiteconverted DNA (bsDNA) was performed using an N60 Implen Nanophotometer. Approximately 200 ng/ul of bisulfite-converted DNA was hybridized on Illumina Infinium Methylation EPIC BeadChips. Fluorescent signals were detected using the (two-color laser-532 nm/660 nm) Illumina iScan scanner and saved as intensity data files (*.idat). The methylation level for each CpG site is represented as β-values based on the fluorescent intensity ratio between methylated and unmethylated probes. β-values may range between 0 (non-methylated) and 1 (completely methylated).
+ Open protocol
+ Expand
3

Analytical Techniques and Instrumentation

Check if the same lab product or an alternative is used in the 5 most similar protocols
XSE204 balance was provided by Mettler-Toledo (Greinfesee, Switzerland). A11 basic ultra-turrax and MS3 vortex mixer were purchased from IKA (Staufen, Germany). Automatic horizontal shaker was provided by Hannuo Instruments Co., Ltd. (Shanghai, China). The precision vertical thermostatic light oscillation incubator was provided by Laibo Technology Co., Ltd. (Tianjin, China). JSM-6390 LV scanning electron microscopy was purchased from Japan Electronics Co., Ltd. (Tokyo, Japan). U-LH100-3 fluorescence microscopy was acquired from Yonke Instruments Co., Ltd. (Shanghai, China). N60 nanophotometer was provided by Implen Gmbh (Munich, Germany). Quantitative real-time PCR was purchased from Roche Diagnostics GmbH (Mannheim, Germany).
+ Open protocol
+ Expand
4

Concentrated mAb Formulation and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
The originally formulated 20 mg/ml h2E2 mAb contains 0.01% PS 80, and is the only available mAb drug substance for this mAb. Since PS 80 surfactant cannot be readily eliminated by dialysis due to its large micellar size and small CMC , we concentrated this material as is to 120 mg/ml using Centriprep 30 centrifugal concentrators, knowing that some of the PS80 would be concentrated along with the mAb. The concentrated mAb was then subsequently sterilized using 0.22 μm Millex-GP filters, yielding a final mAb concentration of 120 mg/ml (measured by the absorbance at 280 nm). All UV A280 nm mAb concentration measurements were performed without dilution using an Implen N60 nanophotometer and an applied sample volume of 1.5 μl. For each reformulation buffer tested, approximately 2.7 ml of 120 mg/ml mAb was dialyzed 3 times vs approximately 330 ml of buffer each time, at 4°C, over a total time period of 22 hrs (3 hrs, 4 hrs, and 15 hrs dialysis at 4°C). 3-4 ml volumes of the reformulated mAb solutions were examined for particulates and turbidity in glass tubes using white light illumination from behind and underneath the sample glass tubes. In addition, 200 μl volumes of each 40°C heat-treated sample were examined for particulates and turbidity in clear, thin-walled PCR tubes, using white light illumination from behind the tubes.
+ Open protocol
+ Expand
5

Amplicon Sequencing and Antibiotic Resistance Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
DNA extraction for amplicon sequencing and antibiotic resistance gene detection was performed as previously described (Helsens et al., 2020 (link)). Briefly, 30 g of a fillet sample were rinsed with 50 ml phosphate buffer saline (Interchim, Montluçon, France) and 5% Tween 80 (Sigma-Aldrich, MO, United States) in a stomacher bag with a 63-μm porosity filter (BagPage 400 F, Interscience). After rinsing, the liquid phase was filtered through the stomacher bag membrane and centrifuged, and the bacterial pellet was stored at −20°C until DNA extraction. DNA was extracted using the Dneasy® PowerFood® Microbial Kit (Qiagen, Courtaboeuf, France) according to manufacturer’s instructions, with added enzymatic and mechanical cell lysis steps. Afterward, DNA was quantified using a N60 NanoPhotometer® (Implen, München, Germany) and then stored at −20°C until use. As amplicon sequencing needs negative controls to exclude DNA contamination during extraction, mock extractions (fish fillet samples omitted) were also performed.
+ Open protocol
+ Expand
6

Labeling Anti-cocaine Antibody with FITC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-cocaine h2E2 mAb at 5 mg/ml was labeled with 2.0 mM FITC at 22 °C in 100 mM NaBO3 pH = 8.0 buffer for 15, 30, 60, 90, and 120 min. Labeling was stopped at each time point by applying 0.8 ml of the reaction mixture to an approximately 5 ml Sephadex G-50 sizing column equilibrated in PBS buffer. Fractions of 0.4 ml were collected and analyzed for protein and FITC content and degree of labeling by scanning 1.5 μl of each fraction from 900 nm to 200 nm using an Implen N60 NanoPhotometer. The extinction coefficients used for the h2E2 mAb (at 280 nm) and FITC (at 494 nm) were 219,500 and 70,000 M−1cm−1, respectively, and a correction factor for FITC absorbance at 280 nm of 0.30 was used to calculate the concentration of mAb and incorporated FITC label, and thus the stoichiometry of labeling. G-50 column fractions with the same calculated stoichiometry of FITC labeling from each labeled time point sample were pooled and re-quantitated for concentration of mAb and degree of labeling with FITC, using the same nanophotometer.
+ Open protocol
+ Expand
7

Assassin Bug Venom Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Venom was extracted from the PMG of fifth-instar or adult assassin bugs. Individuals were anesthetized at −20 °C for 5 min before dissection in phosphate-buffered saline (PBS). The posterior lobe was separated from the AMG and AG and transferred to a pre-cooled tube containing 100 µL of 20 mM MES (pH 5.5) on ice. After briefly vortexing, the samples were centrifuged (4000× g, 3.5 min at 4 °C), and the supernatant was further clarified by additional centrifugation (13,000× g, 3 min, 4 °C). The venom extracts of several individuals were pooled and stored at −20 °C for analysis. The total protein concentration in the venom samples was determined using an N60 Nanophotometer (Implen, Munich, Germany).
+ Open protocol
+ Expand
8

Isolation and DNA Extraction of Pantoea sp.

Check if the same lab product or an alternative is used in the 5 most similar protocols
The endophyte, Pantoea sp. strain MHSD4 was previously isolated and identified in a study by Mahlangu and Serepa-Dlamini,18
and the 35% glycerol stock cultures of the endophyte were preserved at −80°C. In this study, the endophyte was re-cultured on tryptic soy agar (TSA) for 48 hours at 28°C.19 (link)
The total genomic DNA of the bacterial culture was extracted from pure colonies using the Nucleospin® Microbial DNA extraction kit (Macherey-Nagel, Germany) according to the manufacturer’s protocol. The extracted DNA quality and quantity was determined using the Implen Nanophotometer N60 (Implen GmbH, Germany).
+ Open protocol
+ Expand
9

Evaluating BRACO19 Effects on Mtb H37Ra Growth

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary cultures of Mtb H37Ra were grown at 37 °C and 220 rpm in 5 ml 7H9 broth supplemented with BD Difco BBL Middlebrook ADC enrichment till OD600 1.5. Secondary cultures were then inoculated into 5 ml fresh media (1:100 dilution) with 0 μM (no BRACO19 control), 5 μM and 10 μM of BRACO19. OD600 was then measured every 24 h till saturation. Cultures were then grown until OD600 0.6. Cells were harvested by centrifugation of the culture at 12,000 rpm for 5 min. Total RNA was extracted using the standard TRIzol reagent protocol for bacteria. RNA concentrations were measured using Implen Nanophotometer N60. cDNA synthesis was carried out using the iScript cDNA synthesis kit (Bio-Rad) with 1 μg of DNase I-treated RNA. RT-qPCR was then performed in triplicates using the iTaq Universal SYBR Green Supermix (Bio-Rad). The fold change in the expression levels was calculated using the ΔΔCt method (70 (link)) with the Ct values using rpoB as the housekeeping gene for normalization (qPCR primers listed in File S2, Table S2).
+ Open protocol
+ Expand
10

Plasma Total RNA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from archived plasma using the miRNeasy Serum/Plasma kit (Qiagen, Germany) according to the manufacturer’s instruction. In brief, 200 uL of the plasma was mixed with five volumes of Qiazol and a fold of chloroform. Spike-in controls, cel-miR-39 and cel-miR-254, were added for normalization and as an indicator of extraction efficiency. After absorption, 14 uL of RNase-free water was added to the spin column to elute total RNA. MiRNA concentration was measured by a Nanophotometer (IMPLEN NanoPhotometer N60, Munich, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!