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Drx 600 nmr spectrometer

Manufactured by Bruker
Sourced in United States, Germany

The DRX-600 NMR spectrometer is a laboratory instrument designed for nuclear magnetic resonance (NMR) spectroscopy. It is capable of operating at a frequency of 600 MHz and is used for the analysis and characterization of chemical compounds.

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20 protocols using drx 600 nmr spectrometer

1

Characterization of Compound (I) by 13C NMR

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Example 6

The 13C nuclear magnetic resonance (13C NMR) spectrum of crystalline Form II of Compound (I) shown in FIG. 5 was obtained using a Bruker DRX-600 NMR spectrometer operating at a frequency of 150.90 MHz. The sample concentration was approximately 3.1% (w/v) in CD3CN. The reference compound was CD3CN (1.39 ppm for the CD3 group; the —CN group was observed at 118.45 ppm). The spectrum was obtained at 0° C. to sharpen signals that were broad at ambient temperature. Signal assignments following the numbered structural formula of Compound (I) below are provided in Table 2.

[Figure (not displayed)]

TABLE 2
13C NMR Signal Assignments
δC (ppm)Assignment*
163.56C1′
158.9 (broad)C3′, C5′
156.29, 156.25C1a
138.75, 138.71C4″
135.13C1″
129.96C3″, C5″
128.89, 128.78C2″, C6″
111.34C4′
87.88, d, JCF = 174.3C3 (rotamer)
87.69, d, JCF = 174.1C3(rotamer)
67.46, 67.36C1a″
48.40, d, JCF = 20.7C2(rotamer)
48.16, d, JCF = 20.7C2(rotamer)
44.06, 43.90C6
43.09, d, JCF = 2.7C4a
39.22, d, JCF = 20.3C4
24.58, 24.38C5
 21.15C4″

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2

Chromatographic Purification and Spectroscopic Analysis

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The NMR spectra were recorded on the Bruker DRX-600 NMR spectrometer for 1H- and 13C-NMR. EI-MS data were obtained on a Finnigan-MAT-95 mass spectrometer. Preparative isolations were performed on Agela HP P050 medium pressure column chromatography (MPCC) system (Tianjin, China). Commercial silica gel (Qing Dao Hai Yang Chemical Group Co., 300–400 mesh) was used for column chromatography. Pre-coated silica gel plates (Yan Tai Zi Fu Chemical Group Co., G60 F-254) were used for analytical thin layer chromatography (TLC). All the solvents used for column chromatography were of analytical-reagent grade.
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3

Synthesis and Characterization of N^α,N^ε-Diacyl-L-Lysines

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The l-lysine and fatty acid chloride were weighed in a molar ratio of 1:2. l-lysine was added into a four-necked flask, followed by a mixture of anhydrous ethanol and deionized water (2:1, v/v). The reaction mixture was cooled in an ice-water bath under stirring. Then fatty acid chloride was added slowly via a dropping funnel. In the meantime, the pH of the reaction solution was adjusted by an aqueous sodium hydroxide solution (10 wt%) and maintained at 9–10. The reaction continued for 3 h after the dropwise addition. At last, the reaction solution was taken out and allowed to stand at room temperature for 3–4 h. After acidification with dilute hydrochloric acid, the precipitate was filtered and washed with deionized water, then rinsed with petroleum ether three times, giving a white, solid appearance the final product.
Four Nα, Nε-diacyl-l-lysines were characterized by FT-IR, ESI-MS, and 1H NMR measurements. IR spectra were obtained on a Nicolet iS10 FT-IR Spectrometer (Thermo Fisher Scientific, Madison, WI, USA) using KBr tablets at room temperature. ESI-MS spectra were recorded using an API3200 triple-quadrupole mass spectrometer (AB SCIEX, Redwood, CA, USA). The 1H NMR spectra were acquired on a DRX-600 NMR spectrometer (Bruker, Ettlingen, German).
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4

Spectroscopic Characterization of Organic Compounds

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Optical rotations were recorded on a Jasco DIP-370 polarimeter. The 1D (1H and 13C) and 2D (HSQC, HMBC, 1H-1H COSY, and NOESY) NMR experiments were recorded on a Bruker DRX 600 NMR spectrometer (Bruker, Billerica, MA, USA). HR-ESI-MS and HR-FAB-MS were measured on an LC-MS-Q-TOF (Agilent Tokyo, Japan) and a JMS-700 mass spectrometer (JEOL, Tokyo, Japan), respectively. Coupling constants are expressed in Hz, and chemical shifts in δ (ppm). Chromatographic separations were performed using column chromatography on a Merck silica gel (70–230), and Medium-Pressure Liquid Chromatography (MPLC) (Büchi Reveleris® Prep system, Flawil, Switzerland) was performed using a silica gel cartridge (40 μM, 12 g) and a C-18 cartridge (WP, 20 μM, 4 g) with a UV-ELSD detector. Thin-layer chromatography (TLC) was performed on glass pre-coated silica gel 60 F254 plates (Merck, Darmstadt, Germany) and reversed phase (RP-18 F254), which were visualized under UV light at (254 and 365 nm) and sprayed with 5% MeOH-H2SO4 reagent, followed by heating for 2–3 min.
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5

Isolation and Characterization of Elasnin

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Stock cultures of S. mobaraensis DSM 40847 were inoculated into 50 mL of AM4, AM5, and AM6 media (Table S1) containing glass beads (to break up globular colonies) and incubated at 30 °C on a rotary shaker (170 rpm). The culture broth was extracted with 1-butanol on days 3, 5, and 7. The crude extracts were dissolved in DMSO before storage and bioassay. Pure compounds were isolated by reversed-phase HPLC (Waters 2695, Milford, MA, USA) using a semi-prep C18 column (10 × 250 mm) that was eluted with a 55 min gradient of 5–95% aqueous acetonitrile containing 0.05% trifluoroacetic acid at a flow rate of 3 mL/min. The structure of elasnin was elucidated through NMR analysis of 1H, 1H-1H-COSY, 1H-13C-HSQC, and 1H-13C-HMBC NMR spectra recorded on a Bruker AV500 NMR spectrometer (Bruker, Billerica, MA, USA) and 13C-NMR spectra obtained with the Bruker DRX600 NMR Spectrometer (Bruker, Billerica, MA, USA) using dimethyl sulfoxide-d6 (1H-NMR DMSO-d6: δH = 2.50 ppm; DMSO-d6: δC = 39.50 ppm).
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6

Synthesis and Characterization of Organic Compounds

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All reagents were purchased from Sigma-Aldrich and used without further purification. Dichloromethane (DCM) and tetrahydrofuran (THF) were distilled from calcium hydride. All reactions were conducted in flame-dried glassware and under nitrogen atmosphere unless stated otherwise. All reactions were magnetically stirred and monitored by thin-layer chromatography (TLC) using Merck silica gel 60 F254 pre-coated plates (0.25 mm). Flash column chromatography was performed using silica gel (0.032–0.063 mm particle size) from Fisher Scientific. All 1H-, 13C- and 2D-NMR experiments were performed on either a Bruker Avance DPX 400 MHz, Bruker Avance III HD NanoBay 400 MHz or DRX600 NMR spectrometer equipped with a TXI (5 mm) cryoprobe. Chemical shifts were reported in ppm using residual CDCl3H; 7.26 ppm, δC; 77.36 ppm), or (CD3)2CO (δH; 2.05 ppm, δC; 29.84 ppm), or CD3OD (δH; 3.31 ppm, δC; 49.00 ppm) as an internal reference. Polarimetry data was collected on a JASCO polarimeter (model no. P-1010). LC–MS was conducted using an Agilent 6130 single-quadrupole LC–MS system. High-resolution mass-spectrometry (HRMS) was conducted using a Thermo-Fisher QExactive-Plus Orbitrap instrument. Infrared spectroscopy was conducted using a Thermo-Fisher Nicolet iS5 FT–IR spectrometer.
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7

Purification and Characterization of Compounds

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The UV spectra were obtained from a Hitachi U-3000 spectrophotometer (Hitachi, Tokyo, Japan). Optical rotations were measured on a Rudolph Autopol III automatic polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). CD spectra were acquired on a JASCO-810 spectropolarimeter (JASCO, Easton, MD, USA). NMR spectra were obtained using a Bruker DRX-600 NMR spectrometer (Bruker, Fällanden, Switzerland) at room temperature with TMS (tetramethylsilane) or solvent signals as calibration. High-resolution electrospray ionization mass spectrometry (HR-ESI-MS) results were recorded on an Agilent 6210 TOF LC-MS spectrometer (Agilent Technologies, Santa Clara, CA, USA). Silica gel (200–300 mesh) for column chromatography (CC) was purchased from Qingdao Marine Chemical Factory, Qingdao, China. Sephadex LH-20 was produced by Pharmacia Biotech, Uppsala, Sweden. Semi-preparative HPLC purification was carried out on a Kromasil 100-5-C18 column (5 μM, 250 × 10 mm, AkzoNobel, Shanghai, China). All chemicals used in the study were of analytical or HPLC grade.
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8

NMR Spectroscopy Analysis of Compound (I)

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Example 6

The 13C nuclear magnetic resonance (13C NMR) spectrum of crystalline Form II of Compound (I) shown in FIG. 5 was obtained using a Bruker DRX-600 NMR spectrometer operating at a frequency of 150.90 MHz. The sample concentration was approximately 3.1% (w/v) in CD3CN. The reference compound was CD3CN (1.39 ppm for the CD3 group; the —CN group was observed at 118.45 ppm). The spectrum was obtained at 0° C. to sharpen signals that were broad at ambient temperature. Signal assignments following the numbered structural formula of Compound (I) below are provided in Table 2.

[Figure (not displayed)]

TABLE 2
13C NMR Signal Assignments
δc (ppm)Assignment*δc (ppm)Assignment*
163.56C1′87.69, d, JCF = 174.1C3 (rotamer)
158.9 (broad)C3′, C5′67.46, 67.36C1a″
156.29, 156.25C1a48.40, d, JCF = 20.7C2 (rotamer)
138.75, 138.71C4″48.16, d, JCF = 20.7C2 (rotamer)
135.13C1″44.06, 43.90C6
129.96C3″, C5″43.09, d, JCF = 2.7C4a
128.89, 128.78C2″, C6″39.22, d, JCF = 20.3C4
111.34C4′24.58, 24.38C5
 87.88, d, JCF = 174.3C3 (rotamer)21.15C4″

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9

NMR Spectroscopy of Cycloyin Sample

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CY (50 mg) was accurately weighed and dissolved in D2O to exchange hydrogen atoms for deuterium and then freeze-dried, repeated threetimes to obtain the sample. 1H and 13C NMR spectra of the CY sample were determined using a Bruker DRX-600 NMR spectrometer (Bruker BioSpin GmbH, Rheinstetten, Germany). MestReNova (Mwstrelab Research, Santiago de Compostela, Spain) software was used to process and analyze the NMR spectra results.
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10

NMR Characterization of Compound I Form II

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Example 6

The 13C nuclear magnetic resonance (13C NMR) spectrum of crystalline Form II of Compound (I) shown in FIG. 5 was obtained using a Bruker DRX-600 NMR spectrometer operating at a frequency of 150.90 MHz. The sample concentration was approximately 3.1% (w/v) in CD3CN. The reference compound was CD3CN (1.39 ppm for the CD3 group; the —CN group was observed at 118.45 ppm). The spectrum was obtained at 0° C. to sharpen signals that were broad at ambient temperature. Signal assignments following the numbered structural formula of Compound (I) below are provided in Table 2.

[Figure (not displayed)]

TABLE 2
13C NMR Signal Assignments
δC (ppm)Assignment*
163.56C1′
158.9 (broad)C3′, C5′
156.29, 156.25C1a
138.75, 138.71C4″
135.13C1″
129.96C3″, C5″
128.89, 128.78C2″, C6″
111.34C4′
 87.88, d, JCF = 174.3C3 (rotamer)
 87.69, d, JCF = 174.1C3 (rotamer)
67.46, 67.36C1a″
48.40, d, JCF = 20.7C2 (rotamer)
48.16, d, JCF = 20.7C2 (rotamer)
44.06, 43.90C6
43.09, d, JCF = 2.7 C4a
39.22, d, JCF = 20.3C4
24.58, 24.38C5
 21.15C4″

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