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10 protocols using dodecanol

1

Hydrogenation of 5-Hydroxymethylfurfural

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The HMF hydrogenation reactions were carried out in a 100 mL stainless steel autoclave equipped with a mechanical stirrer and a thermocouple. In a typical experiment, 0.1550 g of HMF (Sigma-Aldrich, 99%) were dissolved in 15 mL of 2-butanol (Sigma-Aldrich, 99%). The solution was placed into a glass inlet with the appropriate amount of activated catalyst (Ru:HMF molar ratio of 1:100). The system was then sealed and purged with N2 first and then H2, which pressurized the reactor to the desired pressure (20 bar). The autoclave was heated up to 150 °C and the solution was stirred at 1000 rpm. Samplings were carried out by stopping the stirring and quenching of the reaction of the samples in an ice bath. A sample of the reaction solution (ca. 500 µL) was withdrawn and centrifuged in order to separate the catalyst from the solution. The filtrate was diluted with a solution of an external standard (dodecanol, Sigma-Aldrich, >98%) for GC measurement. Product analysis was carried out with a GC-MS (Thermo Scientific, Waltham, MA, USA, ISQ QD equipped with an Agilent VF-5ms column) and the resulting fragmentation peaks were compared with standards present in the software database. Product quantification was carried out through a GC-FID equipped with a non-polar column (Thermo Scientific, TRACE 1300 equipped with an Agilent HP-5 column).
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2

Dodecane and Chemical Standards Analysis

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Laboratory grade dodecane (D–H, D = C12H25) was purchased from Fisher Chemical and used as is. Analytical standard grade chemicals used for GC-TOFMS identification of octanol, octanal, decanal, dodecanol, and dodecene were purchased from Sigma Aldrich and used as is. All other compounds were synthesized in-house and had a purity >97% as measured with 13C- and 1H-NMR spectroscopy.
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3

Fatty Acids and Hydrocarbons Characterization

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The linear (C7-C30) hydrocarbons, squalene, nonanal, (E)-2-nonenal, (E)-2-decenal, decanal, (E,Z)-2,4-decadienal, nonanol, dodecanol, tetradecanol, hexadecanol, octadecanol, docosanol, nonanoic acid, dodecanoic acid, myristic acid, palmitoleic acid, palmitic acid, linoleic acid, oleic acid, and geranyl acetone were purchased from Sigma-Aldrich, and 2,13-octadecadienol diastereomers were kindly donated by Dr. Wittko Francke from the University of Hamburg.
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4

Comprehensive Analysis of Volatile Compounds

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The standards of volatile compounds were purchased from Sigma-Aldrich (St. Louis, MO, USA), including isobutanol, 3-methyl-1-butanol, cis-3-hexen-1-ol, 1-hexanol, heptanol, octanol, phenethyl alcohol, 2,6-nonadien-1-ol, dodecanol, ethyl acetate, isoamyl acetate, ethyl lactate, ethyl hexanoate, ethyl octanoate, diethyl succinate, phenethyl acetate, ethyl decanoate, butanoic acid, hexanoic acid, octanoic acid, dodecanoic acid, octanal, (2e,6z)-2,6-nonadienal, benzaldehyde, furfural, citronellol, linalool, rose oxide, geraniol, nerol, β-damascenone, β-ionone, nerolidol, hexanal, guaiacol, 4-Ethylphenol, and 2-octanol which were used as the internal standard.
Folin–Ciocalteu reagent and sodium chloride were purchased from Beijing Chemical Works (Beijing, China). Potassium hydrogen tartrate were purchased at Kemiou Chemical Reagent Co. (Tianjin, China). Bovine serum albumin was obtained from Asahi Kasei Corporation (Tokyo, Japan). Deionized water (<18 MW resistance) was purified by using a Milli-Q purification system (Molecular, Chongqing, China). Bentonite, soybean protein and potassium metabisulfite were purchased from Lallemand Company (Lallemand, Toulouse, France).
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5

Cardiomyocyte Differentiation Assay

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CYP was purchased from Logan Natural Product (Plano, TX), and DTX was obtained from LC Laboratories (Woburn, MA). Dodecanol (DC), 1-ethyl-3-(3-(dimethylamino)propyl carbodiimide, N,N′-dicyclohexylcarbodiimide (EDC), N,N-dimethylpyridin-4-amine (DMAP), N,N′-Dicyclohexylcarbodiimide (DCC), Boc-β-alanine, dichloromethane (DCM), and hydroxybenzotriazole (HOBT) were obtained from Sigma-Aldrich (St. Louis, MO). Primary antibodies Shh (rabbit polyclonal antibody sc-9024), Bax (rabbit polyclonal antibody sc-6236) and GAPDH (mouse monoclonal antibody sc-365062) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Secondary antibodies goat anti-rabbit IgG-HRP (sc-2054) and goat anti-mouse IgG-HRP (sc-2055) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). Matrigel® matrix basement membrane was obtained from Corning (Chicago, IL). All other chemicals were analytical grade and were purchased from Sigma-Aldrich (St. Louis, MO).
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6

Antioxidant and Anti-Inflammatory Protocol

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ROS, CAT, SOD (WST-8 method), the CCK-8 detection kit, and antioxidant NAC were purchased from Biyuntian Company (Shanghai, China). The POD detection kit, MC903, bovine serum albumin (BSA), cobalt acetylacetonate, dodecanol, octadecene, oleic acid, and oleylamine were purchased from Sigma (Shanghai, China). H2O2, ethanol, and isopropanol were purchased from Shenggong Company (Shenzhen, China). Rabbit anti-IgG and TSLP antibody (ab188766) were purchased from Abcam (Cambridge, UK). EDTA antigen retrieval solution, an immunohistochemistry kit, TB staining solution, and glacial acetic acid were purchased from Servicebio (Wuhan, China). Xylene and neutral gum were purchased from Sinopharm (Beijing, China). Dexamethasone (compound dexamethasone acetate gel) was purchased from Jinri Pharmaceutical Company (Xiamen, China).
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7

Synthesis of Peptide-Based Compounds

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The resin Rink amide and the reagents Fmoc-Ser(tBu)-OH, Fmoc-Pro-OH, Fmoc-Ile-OH, Fmoc-Asn(Trt)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Lys(Boc)-OH, Fmoc-His(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc-Cys(Trt)-OH, Fmoc-6-aminohexanoic acid (Fmoc-Ahx-OH), dicyclohexylcarbodiimide, and 1-hydroxy-6-chlorobenzotriazole were purchased from AAPPTec (Louisville, KY, USA). The reagents acetonitrile, trifluoroacetic acid, dichloromethane, diisopropylethylamine, N,N-dimethylformamide, ethanedithiol, isopropanol, methanol, and triisopropylsilane were purchased from Merck (Darmstadt, Germany). SPE columns Supelclean™, 6-maleimidohexanoic acid (6-MhxA), tetrabutylammonium chloride, glycidyl methacrylate (GMA), ethylene dimethacrylate (EDMA), cyclohexanol, dodecanol, 1,1′-azobis(cyclohexanecarbonitrile), silica gel, Tween 20, and 3,3′,5,5′-tetramethylbenzidine (Liquid Substrate System for ELISA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Potassium diacid phosphate, sodium acid phosphate, sodium chloride, and potassium chloride were purchased from AppliChem Panreac (Barcelona, Spain).
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8

Synthesis of Dodecyl Derivatives

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Nitric acid (fuming), triflouroacetic anhydride were purchased from Acros chemical and used as received. Dodecanol, dodecylamine and 1-bromododecane were all purchased from Sigma Aldrich (reagent grade) and used as received. Deuterated solvents (chloroform d) were purchased from Cambridge Isotope Laboratories and used as received. 1H-NMR and 13C-NMR spectra were recorded on a 400 MHz Bruker spectrometer. NMR signals were referenced to residual solvent signals in the deuterated solvents. Synthesis reaction schemes can be found in Fig. S2 in the ESI.
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9

Synthesis of Cy5.5-labeled let-7b miRNA Conjugate

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Dodecanol (DC), trimethylamine (TEA), 1-ethyl-3-(3- (dimethylamino)propyl) carbodiimide (EDC), hydroxybenzotriazole (HOBT), 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), benzyl bromide, 2, 2-bis (hydroxymethyl) propionic acid, methoxy poly (ethylene glycol) (mPEG, Mn = 5000, PDI= 1.03), stannous 2-ethyl hexanoate (Sn(Oct)2) and olomoucine were purchased from Sigma-Aldrich (St. Louis, MO). Tetraethylenepentamine (TEPA) was purchased from Alfa-Aesar (Ward Hill, MA). Cy5.5-let-7b (mature sequence UGAGGUAGUAGGUUGUGUGGUU) was purchased from Invitrogen (Carlsbad, CA). GDC-0449 was purchased from LC Laboratories (Boston, MA). Matrigel matrix basement membrane was procured from Corning (Chicago, IL). All other reagents were purchased from Sigma-Aldrich and used without further purification.
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10

Synthesis and Characterization of S-Nitrosoglutathione

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3-(Trimethoxysilyl) propyl methacrylate, methacrylic acid (MAA), ethylene dimethacrylate (EDMA), toluene, dodecanol, and azobis-(isobutyronitrile) (AIBN) were purchased from Sigma-Aldrich (MO, USA). Fused-silica capillaries with 530 μm i.d. × 720 μm o.d. were obtained from Polymicro Technologies™. Acetonitrile (ACN), methanol, acetone and formic acid of LC grade were also from Sigma-Aldrich (MO, USA). Ultra-Pure water was obtained using an in-house purification system. Mercury chloride (HgCl2), ethylenediaminetetraacetic acid (EDTA), potassium dihydrogen phosphate (KH2PO4), mPEG-maleimide, sodium nitrite, glutathione (GSH) and 13C2,15N-labeled G*SH were from Sigma-Aldrich (MO, USA) and were used without additional purification. Vivaspin 3000 MWCO membrane filters were from Sartorius Stedim (NA, USA). All sample preparations were carried out in the dark at 4°C unless otherwise stated. GSNO, 13C2,15N-labeled G*SNO and 2-[1-(dimethylamino)ethanethioate]triphenylphosphine (derivatizing reagent) were synthesized as described earlier,18 (link) and were confirmed by LC/ESI-HR-MS (see Figure S-1 and Supporting Information for details).
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