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11 protocols using kribb11

1

Breast Cancer Cell Line Cultivation

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MCF10A, MCF7, BT474, MDA-MB-361, SKBR3, MDA-MB-453, MDA-MB-231, MDA-MB-468, and BT20 cells were purchased from ATCC and cultured according to ATCC recommendations. Human mammary epithelial cells (HMEC) cells were purchased from Lonza and cultured according to the provider. MK-2206 was purchased from Selleck Chemicals and KRIBB11 from Millipore. MK-2206 and KRIBB11 stocks were made using dimethyl sulfoxide (DMSO) for administration in cell culture.
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2

Glioblastoma Cell Maintenance Protocol

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A172 human glioblastoma cells were maintained in RPMI 1640 medium supplemented with 10% fetal bovine serum (GeneDEPOT Barker, TX, USA) and penicillin/streptomycin (Biowest, Nuaillé, France) at 37 °C in a humidified incubator with 5% CO2. KRIBB11, crystal violet, MG132, and CHX were purchased from Sigma-Aldrich (St. Louis, MO, USA). PI was obtained from Biobud (Seongnam, Korea). The caspase inhibitor Z-VAD-FMK was obtained from Promega (Madison, WI, USA).
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3

Modulation of HSF1 in CD4+ T Cells

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HSF1 siRNA or scrambled siRNA (Ctrl Si) were synthesized by GenePharma (Shanghai, China). The target sequences for HSF1 are listed in Table 1. For siRNA transfection, CD4+ T cells (1 × 106/well) were seeded in 24-well plates overnight and transfected using Lipofectamine TM RNAi MAX transfection reagent (Invitrogen, USA) for 24 h. For inhibition of HSF1, 1 × 106 CD4+ T cells were seeded overnight in 48-well plates and 5 μM HSF1 inhibitor KRIBB11 (Sigma Aldrich, USA) were added for 24-48 h. DMSO was used as a negative control.
The HSF1 ORF (open reading frame) was amplified by PCR and inserted into a lentivirus vector (pPCDH-CMV-MCS-EF1-GFP) after sequencing confirmation. CD4+ T cells were then transfected with the packaged recombinant lentivirus or scrambled control vector. Briefly, viral supernatant was concentrated using PEG-it virus precipitation solution (System Biosciences, USA). High titer virus was then incubated with isolated CD4+T cells, followed by spinoculated for 2 h at 300g with polybrene (8 mg/ml) and cultured for 48 h. The expression of CD69 after transduction was confirmed by using FACS.
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4

Breast Cancer Cell Line Treatments

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MCF7 (HTB-22; ATCC), T47D (HTB-133; ATCC), and LCC1, LCC2, and LCC9 (provided by the laboratory of Robert Clarke) cells were grown in DMEM (#11965–092; Gibco) supplemented with 10% fetal bovine serum (#12483020; Invitrogen), 100 μM MEM nonessential amino acids (#25–0250; Cellgro), 2 mM L-glutamine (#25030–081; Gibco), 100 U/ml penicillin, and 100 μg/ml streptomycin (#15170–063; Gibco). Cells were treated with (Z)-4-Hydroxytamoxifen (#H7904; Sigma-Aldrich), Fulvestrant (ICI 182,780, #I4409; Sigma-Aldrich), KRIBB11 (#385570; Sigma-Aldrich), MG-132 (#C2211; Sigma-Aldrich), or vehicles as indicated. For heat shock, the cells were grown at 42°C for the indicated times.
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5

In Vitro KRIBB11 and mEHT Protocol

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In vitro treatments were performed as described by us earlier [1 (link)]. Briefly, 1 × 106 4T1 cells were pretreated in cell culture with 5 µM KRIBB11 (#385570, Sigma-Aldrich Co., St. Louis, MO, USA) or 0.01% DMSO (#D2438, Sigma-Aldrich Co., St. Louis, MO, USA) for 1h before mEHT. The cell suspension was transferred into a plastic bag for treatment with the LabEHY 200 in vitro applicator. A thermosensor (TM-200 thermometer, Oncotherm Ltd., Budaörs, Hungary) was inserted into the bag for temperature follow-up. The unit was placed in glass cuvette (filled with distilled water), which was inserted between the two electrodes of the in vitro applicator (Oncotherm Ltd., Budaörs, Hungary). An average of 4 ± 1 Watts was applied with the same amplitude-modulation (AM) as in the in vivo experiments. The temperature rise of the cell suspension was around 2.3 ± 0.8 °C/min. Cells were treated for 30 min in a temperature-driven way to maintain 42 °C in the cell suspension. Cells were collected 2 h after mEHT treatment, lysed with Tri-Reagent (#TR118/200, Molecular Research Center, Inc., Cincinnati, OH, USA) and processed for RNA isolation.
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6

Latency Reversal Assay Protocol

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EIF2α, p-EIF2α (Ser51), RelA, NFATc1, c-fos, ATF3, HSF1, p-HSF1 (Ser320), p24, Lamin A/C, β-actin antibodies and secondary antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Acetylated lysine antibody, p300, CDK9 and Cyclin T1 antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Human FITC conjugated anti-CD25 and PE conjugated anti-CD69 antibodies were purchased from BD Biosciences (San Jose, CA, USA). PHA, poly I:C, STA-4783, thapsigargin, prostratin, PMA, ionomycin, SAHA, JQ1, dilazep, TNF-α, hemin, salubrinal, MG-132, BAY 11-7082, CsA, C646 and EX527 were from Sigma-Aldrich (St. Louis, MO, USA). Resveratrol, parthenolide (PTN), Ver-155008, KRIBB11, 17-DMAG and NVP-AUY922 were from Merck Calbiochem (Darmstadt, Germany). PEZ-HSF1 was purchased from ViGene Bioscience Inc (MD, USA). NL4-3E-R-luc plasmid, J-Lat 10.613 (link), U141 (link) and ACH242 (link) cell lines were obtained from the National Institutes of Health AIDS Research and Reference Reagent Program.
J-Lat 10.6, U1 and ACH2 cell lines were maintained in RPMI1640 (Gibco, Grand Island, NY) supplemented with 10% fetal bovine serum (Gibco) at 37 °C with 5% CO2. High temperature treatment (39.5 °C) was operated by putting cells in another incubator which temperature was adjusted to 39.5 °C.
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7

Synthesis and Compound Acquisition Protocol

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CCT251236 was synthesized as described [26 (link)]. Compounds were purchased as described: KRIBB11 (Merck Millipore), bortezomib (Cambridge Bioscience), Z-VAD-FMK and puromycin (InvivoGen), pactamycin and tunicamycin (Sigma). Plasmids were purchased or obtained as described: HSF1 shRNA pLKO.1 plasmids (Thermo Fisher; TRCN0000007480, TRCN0000007484), pLKO.1 empty vector, pLKO.1 GFP shRNA, pCMV-R8.72 lentiviral packaging and pCMV-VSV-G envelope plasmid (Addgene; plasmid ID 10878, 30323, 22036 and 8454).
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8

Evaluation of VACV Inhibitors in A549 and HeLa Cells

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A549 or HeLa cells were seeded in 96-well plates the previous day and infected with modified VACV viruses as specified in the text at an MOI of 1 (fluorescence readout) or 0.1 (viral titer). For drug treatment, compounds were added at specified concentrations prior to virus addition. Inhibitor compounds: Triptolide, Quercetin (Tocris Bioscience), KRIBB11 (EMD Millipore), KRIBB3, Pifithrin-μ, Myricetin (Sigma Aldrich), and Heat Shock Protein Inhibitor I/KNK437 (Santa Cruz Biotechnology, Inc.) For fluorophore assays, cells were fixed at 18 hpi with 4% formaldehyde. Plates were read on a Tecan infinite M1000 for Venus (excitation: 515 nm and emission: 528 nm) and mCherry (excitation: 587 nm and emission: 610 nm). For plaque assays, virus was collected 24 hpi and titered by plaque assay.
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9

Metabolic Regulation by Estrogens

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Estrogens were from Steraloids Inc. (Supplementary Table 1). KRIBB11 was from EMD Millipore (385570). Pam3CSK4 (tlrl-pms) and ODN (tlr1–1826-1) were from InvivoGen. LPS (L3024), poly IC (P0913), diethyl maleate (D97703), sodium acetate (S5636), celastrol (C0869), NAC (A7250), itaconate (I29204), oligomycin (495455), FCCP (C2920), and antimycin A (A8674) were from Sigma. MitoQ (89950), nigericin (11437), and rotenone (13995) were from Cayman. Coenzyme A and acetyl-CoA were from Sigma (C4780, A2056) and Cayman (16147, 16160). LPS, Pam3CSK4, pIC, and ODN were used at 100ng/mL, 100ng/mL, 25μg/mL, and 1μM, respectively.
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10

Metabolic Regulation by Estrogens

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Estrogens were from Steraloids Inc. (Supplementary Table 1). KRIBB11 was from EMD Millipore (385570). Pam3CSK4 (tlrl-pms) and ODN (tlr1–1826-1) were from InvivoGen. LPS (L3024), poly IC (P0913), diethyl maleate (D97703), sodium acetate (S5636), celastrol (C0869), NAC (A7250), itaconate (I29204), oligomycin (495455), FCCP (C2920), and antimycin A (A8674) were from Sigma. MitoQ (89950), nigericin (11437), and rotenone (13995) were from Cayman. Coenzyme A and acetyl-CoA were from Sigma (C4780, A2056) and Cayman (16147, 16160). LPS, Pam3CSK4, pIC, and ODN were used at 100ng/mL, 100ng/mL, 25μg/mL, and 1μM, respectively.
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