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Alexa fluor 488 conjugated donkey anti mouse

Manufactured by Thermo Fisher Scientific
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Alexa Fluor 488-conjugated donkey anti-mouse is a fluorescently labeled secondary antibody used for detection and visualization in immunochemical applications. The Alexa Fluor 488 dye is attached to a donkey-derived antibody that specifically binds to mouse primary antibodies.

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31 protocols using alexa fluor 488 conjugated donkey anti mouse

1

Neutrophil Apoptosis Regulation by a2NTD

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1 × 106 freshly isolated neutrophils cultured in complete MEM were treated with 500 ng·mL−1 a2NTD or PBS (vehicle control) in the presence or absence of parthenolide pretreatment (2.5 μm). After four‐hour incubation at 37 °C in CO2 incubator, cells were fixed, cytospun on glass slide, and processed as mentioned earlier. Cells were directly stained with FITC anti‐human Bcl‐xL (Abcam) or with anti‐human c‐FLIP (Enzo Life Sciences) followed by secondary Alexa Fluor® 488‐conjugated donkey anti‐mouse (1 : 200 dilution) (Invitrogen). Cells that were incubated for eighteen hour at 37 °C in CO2 incubator were stained by anti‐human cleaved poly (ADP‐ribose) polymerase (PARP) (Asp 214) (BD Pharmingen), anti‐human Bax 6A7 (Santa Cruz Biotechnology), or anti‐human cleaved caspase‐9 (Asp315) (Cell Signaling) followed by staining with secondary antibodies (1 : 200 dilution) Alexa Fluor® 488‐conjugated donkey anti‐mouse or Alexa Fluor® 594‐conjugated goat anti‐rabbit (Invitrogen). Stained cells were imaged on Olympus microscope and analyzed using nis‐elements software (Nikon Inc, Melville, NY, USA).
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2

Immunofluorescent Cell Morphology Analysis

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Cells grown on glass coverslips were fixed with 3.7% formaldehyde in phosphate-buffered saline (PBS) at room temperature (RT) for 15 min and permeabilized with 0.2% Triton X-100 for 10 min. After incubation at RT for 30 min with blocking solution (0.1% FBS in PBS), the cells were incubated with specific primary antibodies in blocking solution at RT for 1 h. After 3 washing steps with PBS, cells were incubated with fluorescently-labelled secondary antibodies for 45 min at RT. Primary antibodies used were directed against Fascin-1 (1:400; DAKO) and V5 antibody (1:5000; Invitrogen). Filamentous actin was stained by means of Alexa-633-phalloidin and nuclei using NucBlue (Invitrogen). Secondary antibodies were Alexa-Fluor488 conjugated donkey anti-mouse or Alexa-Fluor488 conjugated donkey anti-rabbit (Life Technologies). Immunofluorescent cells were visualized using a spinning disc confocal microscope (iMic, TILL Photonics) equipped with a 60X N.A. 1.35 lens. For the morphological analysis, we used the Cell Profiler software to estimate the perimeter and spreading area of each individual cell [23 (link)]. We then used these values to calculate the ratio between them using the formula: R = perimeter * 100 / area.
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3

Autophagy Regulation in Fibrosis

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Recombinant human TGF‐β2, 3‐methyladenine (3‐MA) and bafilomycin A1 (Baf‐A1) were purchased from PeproTech and Sigma‐Aldrich, respectively. The GFP‐LC3B plasmid was obtained from Addgene (24920), and adenovirus encoding for mRFP‐GFP‐LC3 was obtained from Hanbio Biotechnology. Rabbit anti‐human LC3B, p62, Atg5‐12, Beclin 1 and GAPDH were from Cell Signaling. Mouse anti‐human α‐SMA was from Sigma‐Aldrich. Rabbit anti‐human fibronectin, collagen IV, p‐KRT8, mouse anti‐human KRT8 and LAMP2 were from Abcam. Goat anti‐rabbit or antimouse horseradish peroxidase (HRP)‐labelled secondary antibodies were from Thermo Fisher Scientific. Mouse IgG isotype control, rabbit IgG isotype control, AlexaFluor488‐conjugated donkey antimouse and AlexaFluor555‐conjugated donkey anti‐rabbit secondary antibodies were from Life Technologies.
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4

Immunofluorescence Staining of HeLa Cells

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HeLa cells were grown on coverslips for twenty-four hours and were washed twice
with PBS and fixed with 4% paraformaldehyde in PBS (pH-7.4) for
10 min. After washing with PBS, cells were quenched with
30 mM glycine. Cells were then permeabilized with 0.1% Triton-X-100
for 10 min and blocked with 10% normal goat serum (NGS) in PBS for
1 h. Cells were incubated with appropriate antibodies (anti-Calnexin;
1:200 from SCB, anti-Giantin; 1:1000 from Abcam) for 1 h in PBS
containing 2% NGS. The cells were washed three times with PBST and incubated
with Alexa-Fluor 488-conjugated donkey anti-mouse and Alexa-Fluor 568-conjugated
donkey anti-rabbit (Life Technologies) antibodies for 30 min. The
cells were washed three times with PBST and mounted in Vectashield with DAPI
(Vector Laboratories).
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5

Diaphragm Neuromuscular Junction Labeling

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Diaphragms were dissected and pinned to sylgard dish in 4% paraformaldehyde for 10 min then permeabilized with 0.2% Triton/ PBS for 30 min. Non-specific reactivity was blocked with 2% BSA/ PBS for 2 h. When diaphragms were exposed to α-BTX conjugated Alexa 555 (1:500) alone, no permeabilization was performed to allow detection of AChRs at the membrane. Primary monoclonal antibody for all RyRs (34C, 1:20; Airey et al., 1990 (link)) was applied overnight at room temperature. Primary antibodies for neurofilament (1:100; Sigma) and synaptophysin (1:200; DSHB) were applied overnight at 4 °C. Secondary antibodies (Alexa Fluor 488-conjugated donkey anti-mouse, Alexa Fluor 568-conjugated goat anti-mouse IgG, 1:500, Life Technologies, #A11031) were applied for 1 h.
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6

Immunocytochemistry of Activated Fibroblasts

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CAFs and NFs were collected and seeded into 6-well plates coated with polylysine. Following three rinses with preheated 0.01 mol/L PBS, the cells were fixed with 4% paraformaldehyde under room temperature conditions for a 30-min period. After three PBS rinses, the cells were sealed with blocking solution (Beyotime Biotechnology Co., Shanghai, China) at 37 °C for 60 min. Afterwards, the cells were probed with rabbit antibodies against α-smooth muscle actin (α-SMA; ab32575, 1: 200), fibroblast activation protein (FAP; ab53066, 1: 50), and fibroblast-specific protein 1 (FSP1; ab124805, 1: 500) overnight at 4 °C. The antibodies were obtained from Abcam Inc., Cambridge, UK. The following day, further incubation of the cells was conducted with the following secondary antibodies: Alexa Fluor 594 conjugated donkey anti-rabbit (1: 400, A21202) and Alexa Fluor 488 conjugated donkey anti-mouse (1: 400, A21207), for 1 h in dark, which were both purchased from Life Technologies (Carlsbad, CA, USA). Subsequently, the cells were stained with 4′,6-diamidino-2-phenylindole (DAPI; Beyotime Biotechnology Co., Shanghai, China) at room temperature for 5 min, and sealed with anti-fade mounting medium (Beyotime Biotechnology Co., Shanghai, China). Finally, a high-content screening imaging system (Image Xpress Micro 4, Molecular Devices, Sunnyvale, CA, USA) was employed for photography.
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7

Characterization of MUC16 Localization

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HeLa cells grown on cover slips were transiently transfected with pSecTag2C-HA-MUC16-114-Myc (i.e. HA114Myc) plasmids using Lipofectamine (Invitrogen). HeLa cells grown on cover slips were transiently transfected with p3X-FLAG-CMV9 (CMV9), p3X-FLAG-CMV9-114HA (CMV9-F114HA), p3X-FLAG-CMV10 (CMV10) and p3X-FLAG-CMV10-114HA (CMV10-F114HA) using Lipofectamine. MiaPaCa-2 and T3M4 cells stably transfected with p3X-FLAG-CMV9 and p3X-FLAG-114HA were grown on cover slips for 24 hours. Then the cells were washed twice with PBS and fixed with 4% paraformaldehyde in PBS (pH-7.4) for 10 min. After washing with PBS, cells were quenched with 30 mM glycine. Cells were then either non-permeabilized or permeabilized with 0.1% Triton-X-100 for 10 min and blocked with 10% normal goat serum (NGS) in PBS for 1 h. Cells were incubated with appropriate antibodies (anti-HA; 1:300, anti-FLAG; 1:500, anti-Myc; 1:300, anti-JAK2; 1:300) for 1 h in PBS containing 2% NGS. Cells were washed with PBST (x3) and PBS (x1) and incubated with Alexa Fluor 488-conjugated donkey anti-mouse and Alexa Fluor 568-conjugated donkey anti-rabbit (Life Technologies) antibodies for 30 min. The cells were washed with PBST (x3) and PBS (x1) and mounted in Vectashield with DAPI (Vector Laboratories).
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8

Immunostaining of Embryonic Proteins

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Intact embryos were fixed in 2.5%PFA/ethanol [95 (link)] or methanol/acetone [96 (link)] for all immunofluorescence except for those probed with monoclonal antibody H5, which was fixed in methanol/formaldehyde [95 (link)]. Primary antibodies used were: anti-H3K4me2 (CMA30) 1:1000 END Millipore], anti-P-granules [OIC1D4, 1:5 [96 (link), 97 (link)])], anti-H3K36me3 [(CMA333), 1:1000 [95 (link)]], anti-Ser2p RNA pol II CTD (H5, 1:500, Covance MMS-129R), anti-GFP (1:1000, Novus NB600-308), anti-AMA-1 (1:10,000, Novus 38520002), and anti-FLAG (M2, 1:1000, Sigma F1804). Secondary antibodies used were Alexa Fluor 488-conjugated donkey anti-mouse (1:500, Invitrogen R37114) and Alexa Fluor 594-conjugated goat anti-rabbit (1:500, Invitrogen R37117). Samples were mounted in ProLong Gold anti-fade reagent (Life technologies, P36934) and observed under a fluorescence microscope (Leica DMRXA; Hamamatsu Photonics, Hamamatsu, Japan) with Simple PCI software (Hamamatsu Photonics). Image J was used for quantification of raw immunofluorescence intensity [98 ].
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9

Immunohistochemistry and Western Blot Protocol

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VCR was ordered from Selleck Chemicals (Houston, TX, United States). OT, carmine red, and carboxymethylcellulose were ordered from Sigma-Aldrich Corp (St Louis, MO, United States). Isoflurane was ordered from RWD (Shenzhen, China). VCR and OT were dissolved and attenuated in normal saline (NS). carmine red (6%) was suspended in 0.5% carboxymethylcellulose. Primary antibodies against NeuN, β Ⅲ Tubulin, nNOS, choline acetyltransferase (ChAT), Nrf2, p44/42 MAPK, phospho-p44/42 MAPK, p38 MAPK, phospho-p38 MAPK, and GAPDH were ordered from Gene Tex (Irvine, United States), Cell Signaling Technology (Danvers, MA, United States), Abcam (Cambridge, UK), and Proteintech (Chicago, United States). Fluorescent secondary antibodies of Alexa Fluor 568-conjugated donkey anti-rabbit and Alexa Fluor 488-conjugated donkey anti-mouse were ordered from Invitrogen Life Technology (Foster City, CA, United States). DAPI was ordered from Beyotime Biotechnology (Shanghai, China). Dihydroethidium (DHE) was ordered from Sigma-Aldrich Corp. HRP-conjugated goat anti-rabbit secondary antibody was ordered from Zhongshan Golden Bridge Biotechnology (Beijing, China). Stripping buffer was ordered from CWBIO (Taizhou, China).
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10

Immunocytochemical Characterization of Primary Cells

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The primary cultured cells were fixed for 1 min with 4% paraformaldehyde in 0.1 M phosphate buffer (Wako, Osaka, Japan) at room temperature. After several washes, they were solubulized in PBS with 0.1% Triton X-100 and incubated overnight at room temperature with the following primary antibodies: mouse monoclonal anti-Neuronal ClassIII β-Tubulin (Tuj1) antibody (1:500; Covance, Princeton, NJ, USA), mouse monoclonal anti-CD11b antibody (1:500; BD bioscience, Franklin Lakes, NJ, USA), mouse monoclonal anti-GFAP antibody (1:200; Sigma-Aldrich, St. Louis, MO, USA), and rabbit polyclonal anti-Nogo receptor (NgR1) antibody (1:200; abm, Richmond, BC, Canada). After three rinses with PBS, the cells were incubated for 60 min at room temperature with the following secondary antibodies: Alexa Fluor 594-conjugated goat anti-rabbit (Invitrogen), and Alexa Fluor 488-conjugated donkey anti-mouse (Invitrogen). The cells were rinsed in PBS, mounted with Fluorsave (Calbiochem, San Diego, CA, USA), and observed under a BZ-9000 fluorescence microscope (Keyence, Osaka, Japan).
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