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7 protocols using ab8979

1

Immunofluorescent Detection of GFP-Labeled BMSC

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To detect GFP-labeled BMSC, paraffin-embedded sections were twice deparaffinized with xylene for 5 minutes, and rehydrated in a series of graded alcohol solutions (70%–100%). Endogenous peroxidases were inhibited by incubation with 3% H2O2 in PBS buffer. For antigen retrieval, the samples were heated to 98°C–99°C in antigen-retrieval buffer (10 mMTri-sodium citrate, 0.05% Tween 20, pH 6.0) and incubated for 30 minutes in the pressurized vessel. Nonspecific staining was blocked with a mixture of sera in 1.5%PBS for 30 minutes at room temperature, and incubated in the mixture of two primary antibodies in a pair-wise fashion with the mouse monoclonal anti-GFP antibody (SC-9996) at 1:50 dilutions for 1 hour at room temperature. Following incubation with the appropriate fluorescent-conjugated secondary antibodies, the sections were covered with mounting medium containing DAPI (Santa Cruz, Heidelberg, Germany). The cells were investigated under fluorescence microscope (Leica DMI 4000B; Leica Mycrosystems, Wetzlar, Germany). For other immunostainings, the following antibodies were supplied from Abcam (Cambridge, MA, USA): GFAP (ab4674), anti-vimentin antibody (ab8979) BRN3A (ab81213), and rhodopsin (ab3267). The dilution rate of all primary antibodies was 1:100.
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2

Western Blot Analysis of NEDD4, AKT, PTEN

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Cells were harvested and lysed with RIPA lysis buffer containing protease and phosphatase inhibitor (Thermo Scientific, Beijing, China). Protein concentration was measured using the BCA-kit, and 20 μg of each sample was resolved by SDS-PAGE. The primary antibodies included rabbit anti-human NEDD4 (Abcam, ab14592, UK), mouse anti-human AKT, rabbit anti-human p-AKT (Santa Cruz Biotechnology, sc-5298/135650, Dallas, TX, USA), rabbit anti-human PTEN (Abcam, ab32199, UK); mouse anti-human E-cadherin (Abcam, ab1416, UK), mouse anti-human Vimentin (Abcam, ab8979, UK) and mouse anti-human glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Abcam, ab8245, UK). Optical densitometry analysis was performed using Image J software. GAPDH served as a loading control in each case.
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3

Protein Extraction and Western Blot Analysis

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Proteins were extracted from clinical tissue samples and culturing cells using the RIPA buffer supplemented with proteinase inhibitor cocktail (Pierce Biotechnology) according to the manufacturer's protocols. Protein concentrations were determined using the BCA Protein Assay Kit (Pierce). Extracted proteins were isolated using 10% SDS‐polyacrylamide gel electrophoresis and then transferred onto the PVDF membranes, followed by 5% nonfat milk blocking. Afterward, the membranes were probed using primary antibodies. The primary antibodies were listed as followed: anti‐CCND1 (1:1000, ab134175; Abcam), anti‐p21 (1:1000, #2947; CST), anti‐Snail (1:1000, ab180714; Abcam), anti‐Vimentin (1:1000, ab8979; Abcam), and anti‐β‐actin (1:500, ab20272; Abcam). Following incubation with HRP‐conjugated secondary antibody, the blots were visualized using the ECL detection system (Amersham).
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4

Immunohistochemical Analysis of Tumor Markers

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Paraffin sections made from tumor tissue were prebaked at 80°C for 2 h. After dewaxing, 3% H2O2 solution was employed to block peroxidase for 10 min. Then, the slices were microwave heated in sodium citrate buffer for antigen repair. After serum closure for 30 min, the section cutting was incubated with first antibodies (anti-Ki-67 (ab92742, Abcam, 1 : 1000), anti-E-cadherin (ab1416, 1 : 500), antivimentin (ab8979, 1 : 1000)) overnight at 4°C. HRP-labeled polymer-coupled secondary antibody stained the sections for 1 h. The immune complexes were stained with DAB for 5 min, and nuclei were restained with hematoxylin for 30 s. The sealed slices were allowed to dry and then observed under a microscope for photographs.
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5

Protein Expression Analysis by Western Blotting

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Western blot analysis was conducted as previously described [23 (link)]. Cells were lysed in RIPA protein lysis solution. Equal amounts of proteins were separated by SDS-PAGE and then transferred onto PVDF membranes. The membranes were washed and then incubated with primary antibodies (anti-Ki-67 (ab92742, Abcam, 1 : 1000), anti-E-cadherin (ab1416, 1 : 500), antivimentin (ab8979, 1 : 1000), anti-β-actin (ab8226, 1 : 1000), anti-SLC1A5 (ab237704, 1 : 1600)) overnight at 4°C, followed by incubation with horseradish peroxide- (HRP-) labeled secondary antibody at 37°C for 2 h. Band intensity was quantified by the ImageJ software.
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6

Immunofluorescence Analysis of Murine Cardiac Tissue

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After ISO treatment for 1 h, the mice were anesthetized with 3% isoflurane in oxygen, and the pedal pinch reflexes were completely inhibited before euthanasia. The heart tissues were then isolated and fixed with optimal cutting temperature compound (4583, SAKURA, Torrance, CA, USA). Frozen sections of the mouse hearts (6-μm thick) were obtained using a cryostat (Leica, Wetzlar, Germany), placed on poly-L-lysine-coated glass slides, soaked with acetone, permeabilized with 0.2% Triton X-100 in phosphate-buffered saline (PBS) for 10 min, blocked with 5% BSA and then stained with primary antibodies against vimentin (1:100 dilution, ab8979, Abcam, Cambridge, MA, USA), cleaved caspase-1 p20 (1:200 dilution, PRS3459, Sigma-Aldrich), and the nuclei dye Hoechst 33342. The frozen sections were visualized using a laser scanning confocal microscope (LMS 780, Carl Zeiss, Inc., Thornwood, NY, USA) with a 63×/1.4NA oil immersion objective lens and an excitation wavelength of 405/488/543 nm. All images were acquired with ZEN 2012 software. The immunofluorescence staining and image capturing were carried out without knowledge of treatments.
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7

Western Blot Analysis of Proteins in HCC

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Protein from fresh HCC samples were obtained with RIPA lysis buffer added with protease inhibitors. After quanti cation with bicinchoninic acid (BCA) assay (Beyotime, Jiangsu, China), we separated each protein through 10% SDS-PAGE and then moved them onto PVDF membranes (Millipore, USA). Then, samples were blocked with 5% nonfat milk. After incubation with primary antibodies against GAPDH and JAG2 (1:200, ab109627, Abcam, UK) and secondary antibodies, protein levels were detected with Image J (GE Healthcare Life Sciences). Each sample was analyzed three times.
The total cellular protein and the nuclear protein were extracted according to instructions of nuclear and cytoplasmic extraction reagents kit (Beyotime, Jiangsu, China). The protein concentrations were determined by bicinchoninic acid (BCA) assay (Beyotime, Jiangsu, China). 20 μg of protein was loaded per lane and separated by 10% SDS-PAGE and electrotransferred to PVDF membranes (Millipore, USA). GAPDH was used as internal control. Antibody information: PCNA (1:1000, ab92552, Abcam, UK), MMP2
(1:1000, ab92536, Abcam, UK), MMP9 (1:1000, ab76003, Abcam, UK), Vimentin (1:1000, ab8979, Abcam, UK).
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