The largest database of trusted experimental protocols

13 protocols using eh12.2h7

1

Comprehensive Immune Profiling of T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies against human CD3 (BW264/56) and CD45RA (T6D11) were purchased from Miltenyi Biotec. Antibodies against human CD3 (UCHT1), CD25 (BC96), CD127 (A019D5), PD-1 (EH12.2H7), CCR7 (G043H7), and CD155 (SKII.4) were obtained from Biolegend. Fixable viability dye and antibodies against human CD4 (RPA-T4), CD8α (RPA-T8), and Foxp3 (PCH101) were purchased from Thermo Fisher Scientific, and antibody against human CD96v2 (628211) was obtained from R&D Systems. Fluorescently labeled F(ab′)2 against FcγRI (10.1), FcγRIIA/B (AT10), and FcγRIIIA (3G8) were provided by Mark Cragg, University of Southampton. FcγR staining was performed in PBS/1% BSA, without a prior FcγR blocking step. For CFSE proliferation assays and analysis of CD96 and CD155 expression, cells were incubated for 10 minutes at 4°C with 10% heat-inactivated AB serum (MilliporeSigma) prior to surface staining. For TIL phenotyping, cells were incubated with human FcR blocking reagent (Miltenyi Biotec) for 10 minutes at 4°C prior to surface staining. When required, intracellular staining was performed using the Foxp3 staining buffer kit (Thermo Fisher Scientific). Samples were analyzed with a FACSCanto II flow cytometer and DIVA Software (BD Biosciences), FCS Express (De Novo Software), or FlowJo software (version 10).
+ Open protocol
+ Expand
2

Sorting and Sequencing of TFH Cells from MS and IIH

Check if the same lab product or an alternative is used in the 5 most similar protocols
TFH cells were sorted from the CSF of nine MS donors and nine IIH donors using a BD FACS Aria III cell sorter using an 85 µm nozzle and the drop delay was determined using BD Accudrop beads. Sorting was performed using sort precision mode “purity” for live CD3+CD4+CXCR5+ cells. Antibodies against CD3 (UCHT1), CD4 (OKT4), CXCR5 (J252D4), PD-1 (EH12.2H7), and ICOS (C398.4 A) were from Biolegend. Cells were sorted directly into 1.5 ml reaction tubes containing 100 µl RNA Lysis Buffer (Zymo Research). After sorting, tubes were vortexed, briefly centrifuged and frozen at −80 °C until RNA isolation. Data were analyzed using FlowJo software v10.4.1 (Tree Star, Inc.). Samples for bulk RNA-seq were prepared using a modified version of the SmartSeq2 protocol77 (link). Briefly, unquantified purified RNA was used as input. Reaction volumes were scaled up and the number of PCR cycles during cDNA amplification adjusted accounting for the higher number of input cells compared to the original protocol77 (link). Library Preparation was done by the Next Ultra II FS DNA Library Prep Kit (New England Biolabs) using 1–3 ng of cDNA as input. Sequencing was carried out on a NextSeq500 using the High-Out 75 cycle kit (Illumina).
+ Open protocol
+ Expand
3

Flow Cytometry Analysis of CAR T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect CD19 CAR expression, biotinylated CD19 (10 μg ml−1; Acro Biosystems CD9-H8259) and streptavidin-APC (ThermoFisher S868) were used according to the manufacturer’s instructions. NKG2DL expression was assessed by staining with NKG2D-Fc chimera (10 μg ml−1; Fisher 1299NK050) followed by an αFc secondary stain (Invitrogen A-10631). NIR Live/Dead (ThermoFisher L34976), CFSE (LifeTech C34554) and CellTrace Violet (LifeTech C34557) were used according to the manufacturer’s instructions. Human Fc block (BD 564220) was used before staining with any antibodies. Antibodies for CD69 (FN50; BD, RRID: AB_1727510), CD4 (RPA-T4; BioLegend, RRID: AB_314076); hCD8 (RPA-T8; BioLegend, RRID: AB_10669564), CD3 (UCHT1; BD, RRID: AB_2744387), CD45 (HI30; BD, RRID: AB_395875), CD19 (HIB19; BioLegend, RRID: AB_395813), PD-1 (EH12.2H7; Biolegend, RRID: AB_10900818), CD107a (H4A3; Biolegend, RRID: AB_2562647), mCD8 (53-6.7; BioLegend, RRID: AB_10897101), HER2 (24D2; Biolegend, RRID: AB_756121), and HisTags (4E3D10H2/E3; ThermoFisher, RRID: AB_2610637) and human Fc (HP6069; ThermoFisher, RRID: AB_2534050) were all used at 1:100 dilutions.
+ Open protocol
+ Expand
4

Multiparametric Flow Cytometry for Immune Cell Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single cell suspensions were prepared from lymph node and gastrointestinal mucosal biopsies as previously described [10] and stored in liquid nitrogen. Cryopreserved samples of PBMC, LNMC and GMMC were thawed at 37 °C in RPMI 1640 containing 10% FBS and benzonase (Millipore) at 50 U/mL. Cells were re-suspended in 1X PBS containing Aqua LIVE/DEAD Fixable Dead Cell Stain (Life Technologies) for 20 min at RT in the dark. Cells were washed and re-suspended in wash buffer containing the following fluorescently conjugated antibodies at the indicated dilutions: CD45 (D058-1283, BD #563861,1:80), CD28 (CD28.2, BD #5622596, 1:200), CD4 (L200, BD #563913, 1:100), CCR7 (150503, BD # 561271, 1:40), CD95 (DX2, BD #555674, 1:100), CD3 (SP34-2, BD # 557917, 1:40), and CD8 (SK1, BD #560179, 1:80), CXCR5 (MU5UBEE, Thermo-Fisher # 25-9185-42, 1:30), and PD-1 (EH12.2H7, Biolegend # 329919, 1:100). Cells were sorted in purity mode, using a BD FACSAria II. Sorted CD4+ T cells were FSC singlets, live, CD45+CD3+CD4+CD8− lymphocytes and subsets were defined as follows. For GMMC: naïve (CD28+CD95−) and memory (CD95+). For LNMC: naive (CD95−CD28+), T follicular helper cells (Tfh, CD28+CD95+CXCR5+PD-1high), central memory (CD95+CD28+, non-Tfh), effector and effector memory (CD95+CD28−). CXCR5+ events were determined by a CXCR5 FMO antibody stained sample.
+ Open protocol
+ Expand
5

Comprehensive Immune Profiling of Ascites Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To assess functional and inhibitory markers, 2 × 106 ascites cells were plated in a 96-well plate in RPMI +10% FBS. Cells were initially stained with Zombie NIR (Biolegend) for 15 min at room temperature. Next, the cells were surface stained with 50 μL of a cocktail mix consisting of fluorescent conjugates for CD28 (CD28.2, Biolegend), CD45RA (HI100, Biolegend), TIM-3 (F38-2E2, Biolegend), PD-1 (EH12.2H7, Biolegend), CCR7 (G043H7, Biolegend), and LAG-3 (3DS223H, eBioscience), CD38 (HIB-7, Biolegend), CTLA-4 (L3D10, Biolegend), ICOS (C398.4A, Biolegend) for 25 min at 4°C. Following cell surface staining, cells were treated with cytofix/cytoperm (BD Biosciences) following the manufacturer's recommendations. Intracellular staining was then performed for 30 min at 4°C using fluorescent antibodies against Ki-67 (Ki-67, Biolegend), CD4 (RPA-T4, Biolegend), CD3 (SK7, BD), CD8 (SK1, BD). For hormone-related studies, Granzyme B (QA16A02, Biolegend) was included in the intracellular staining cocktail. Cells were fixed with 1% paraformaldehyde and acquired on a Fortessa flow cytometer (BD Biosciences).
+ Open protocol
+ Expand
6

Multiparameter Flow Cytometry of CD8+ T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Peripheral blood samples to measure CD8 T lymphocyte activation were obtained at baseline and at defined times during the course of the study. Cryopreserved PBMC samples from pre-treatment and post-treatment time points were thawed and stained with master mix of antibodies for surface stains including CD8 (ebioscience, San Diego, CA; RPA-T8), PD-1 (Biolegend, San Diego, CA, USA; EH12.2H7), CD45RA (Biolegend; HI100), CD27(BD, San Diego, CA, USA; L128) and intracellular stains for CTLA4 (BD; BNI3), Eomes (ebioscience; WD1928), Tbet (biolegend; 4B10) and Ki67(BD; B56). Permeabilisation was performed using the Foxp3 Fixation/Permeabilisation Concentrate and Diluent kit (eBioscience). Cells were resuspended in 1% paraformaldehyde until acquisition on a BD Biosciences LSR II cytometer and analysed using FlowJo (Tree Star, San Diego, CA, USA).
+ Open protocol
+ Expand
7

Comprehensive Immunophenotyping of T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surface and intracellular staining were performed as described previously (38 (link)). For the surface staining of human cells, specific antibodies against human CD3 (OKT3; BioLegend), CD4 (OKT4; BioLegend), CD8 (BW135/80; Miltenyi Biotec), CD45RO (UCHL1; BioLegend), CCR7 (G043H7; BioLegend), CD28 (CD28.2; BioLegend), and PD-1 (EH12.2 H7; BioLegend) were used. For intracellular staining, antibodies against human GzmA (CB9; BioLegend), GzmB (QA16A02; BioLegend), and perforin (B-D48; BioLegend) were used. Dead cells were determined by Fixable Viability Dye (Thermo Fisher) staining and excluded from analysis. The numbers of CD3+ CD4+ and CD3+ CD8+ T cells in the blood were calculated from lymphocyte counts measured in a certified clinical laboratory for every patient.
Data were acquired on an LSR II flow cytometer (Becton, Dickinson) from 250,000 to 300,000 lymphocyte-gated events per sample. Analyses were done using FACSDiva software (Becton, Dickinson) and FlowJo software (Becton, Dickinson).
+ Open protocol
+ Expand
8

Evaluating anti-ICAM1 CAR T cell efficacy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Firefly luciferase-expressing target cells (8505C, JV, HeLa, KHM-5M, and
HEK293T cell lines) were plated in triplicate at a density of
5×103 cells per well. Cells were co-cultured with either
non-transduced T cells or anti-ICAM1 CAR T cells at a 2.5:1 ratio
(1.25×104 cells) in media containing 150 μg/mL
D-luciferin (Gold Biotechnology) with or without anti-PD1 antibody (EH12.2H7,
Biolegend) at a concentration of 5 μg/mL. For some experiments, AZD1480
(Selleck) was added together with T cells to inhibit JAK2 activity. Tumor cell
viability was measured periodically over 48 hours using a plate reader (TECAN
Infinite M1000 PRO).
+ Open protocol
+ Expand
9

Multiparametric Flow Cytometry of DCs and T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stainings were performed in 50 µL in 96-well plates. Live/death staining was performed with fixable eFluor506 viability dye (1:2000, 65-0866-14, ThermoFisher) in PBS (30 min, RT). Antibody stainings were performed in PBA (PBS + 5% FBS + 0.01% NaN3) (30 min, 4°C). DC purity was assessed by antibodies against CD141 (1:10, APC, AD5-14H12, 130-113-314, Miltenyi) and XCR1 (1:10, PE, S15046E, 372604, BioLegend), and T cell phenotype was assessed by antibodies against CD25 (1:100, AF488, BC96, 302616, BioLegend), CD127 (1:100, PE/Cy7, A019D5, 351320, BioLegend), CD137 (1:100, PE, 4B4-1, 555956, BD Pharmigen), CD279 (1:100, BV421, EH12.2H7, 329920, BioLegend), and TIGIT (1:100, BB700, 741182, 747846, BioLegend). Cells were washed 2× with PBA before acquisition on a FACSLyric (BD).
+ Open protocol
+ Expand
10

Targeting MUC16 in Ovarian Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
Female NSG mice age 6-8 weeks were purchased from Jackson Laboratory, Bar Harbor, ME, USA. 3x106 SKOV3- MUC16ecto/-Luc, or OVCAR3 tumor cells were injected intraperitoneally (i.p.) on D0, and animals were untreated, treated with T-cells intravenously (i.v) alone or treated with a combination of T-cells and 5μg MUC16ecto- BiTEDs on day 7. Animals in the BiTEDs treatment group received additional 5μg MUC16ecto- BiTEDs treatment on days 9, 11, 14, 16, and 18 for a total of 6 treatments over 2 weeks. Tumor-bearing mice were injected intraperitoneally with D-Luciferin (Goldbio Technology) (150 mg/kg) and after 10 min were imaged under isofluorane anesthesia. Bioluminescent imaging was achieved using the Caliper IVIS imaging system and analyzed with Living Image 4.0 software (PerkinElmer). Image acquisition was achieved using a 25 cm field of view, medium binning level and 60s exposure time. Animals treated with αPD-1 blocking antibody (BioLegend EH12.2H7) received 250μg injected i.p on days 7, 14, 21 and 28 (weekly injections x 4 weeks) after tumor inoculation (day 0). Animals treated with αVEGF blocking antibody (Invivo Gen, hvegf-mab1) received 5 mg/kg i.p injections on days 7, 11, 14, 18, and 21 after tumor inoculation. All mice were monitored for survival and were euthanized when showing signs of distress.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!