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Pd98059

Manufactured by Santa Cruz Biotechnology
Sourced in United States, Germany

PD98059 is a highly selective inhibitor of the extracellular signal-regulated kinase (ERK) pathway. It acts by inhibiting the activation of mitogen-activated protein kinase kinase (MEK), which is an upstream activator of ERK.

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40 protocols using pd98059

1

Investigating Inflammatory Signaling Pathways

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LPS (Escherichia coli, O127:B8) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Mas receptor antagonist A779 was obtained from AbBiotech (San Diego, CA, USA). ACE2 inhibitor MLN-4760 was a product from EMD Millipore (Darmstadt, Germany). SB203580 (a specific inhibitor of p38 MAPK), PD98059 (a specific inhibitor of ERK1/2) and SP600125 (a specific inhibitor of JNK) were purchased from Santa Cruz Biotechnology (Delaware, CA, USA). Rabbit anti-ACE2, anti-p50, anti-p65, and mouse anti-phospho-p50, anti-phospho-p65 and anti-IκBα antibodies were procured from Santa Cruz Biotechnology. Rabbit anti-p38 MAPK, anti-phospho-p38 MAPK, anti-ERK1/2, anti-phospho-ERK1/2, anti-/JNK, anti-phospho-JNK, horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG, and horse anti-mouse IgG antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). TNF-α and IL-1β kits were purchased from Invitrogen (Eugene, OR, USA). AngII and Ang-(1-7) enzyme-linked immunosorbent assay (ELISA) kits were from Kamiya Biomedical (Seattle, WA, USA).
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2

Survival Pathways of Detached Cells

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To mimic loss of attachment, cells were seeded in culture dishes coated with polyHEMA (Sigma-Aldrich) to prevent cell adherence for various period of time. The cell suspensions were placed into regular culture dishes 16 h prior to end-point viable cell counting. To identify the signaling pathways that promote survival of detached cells, a panel of chemical inhibitors were added in culture medium: PTK2/FAK inhibitor – 0.5 μM PF562271 (Selleckchem, Houston, TX, USA), ERK1/2 inhibitor – 10 μM U0126 (LC Laboratories, Woburn, MA, USA) or 10 μM PD98059 (Santa Cruz Biotechnology, Dallas, TX, USA), AKT inhibitor – 30 μM ZSTK474 (LC Laboratories), TGFBRI/II inhibitor – 10 μM LY210761 (Selleckchem), SRC inhibitor – 3 μM dasanitib (LC Laboratories) or Notch inhibitor – 5 μM DAPT (Selleckchem).
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3

Osteogenic Differentiation Pathway Analysis

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Cell culture media and buffer were obtained from HyClone (Waltham, MA, USA). All primary antibodies (BMP-2/4: Cat. No. sc-137087; p-Smad 1/5: Cat. No. sc-12353; Runx2: Cat. No. sc-390351; type 1 collagen: Cat. No. sc-8784; osterix: Cat. No. sc-393060; p-p38: Cat. No. sc-7973; p-ERK: Cat. No. sc-81492; p-JNK: Cat. No. sc-6254; β-actin: Cat. No. sc-8432), secondary antibodies, and MAPK inhibitors (SB203580, SP600125, and PD98059) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). All other chemicals were of the highest commercial grade and purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Renal Fibroblast Inflammatory Response

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The renal fibroblasts were stimulated with UTI89, MG1655, CFT073 wild-type and mutants at a multiplicity of infection (MOI) of 10, Adenosine triphosphate (100 µM, ATP; Sigma-Aldrich), Adenosine (100 µM, Sigma-Aldrich), lipopolysaccharide (1 µg/ml, ultrapure LPS-B5, Invivogen, San Diego, CA, USA), flagellin (1 µg/ml, Invivogen) and Pam3CSK4 (1 µg/ml, Enzo Life Sciences, Lausen, Switzerland) for 6 hours and incubated at 37 °C with 5% CO2. The fibroblasts were also pre-incubated with DMSO (vehicle), p38 MAPK inhibitor SB203580 (10 µM, Santa Cruz Biotechnology Inc., Heidelberg, Germany), ERK1/2 inhibitor PD98059 (10 µM, Santa Cruz Biotechnology Inc), NF-κB inhibitor BAY 11-7082 (5 µM, Enzo Life Sciences) and the PKC inhibitor bisindolylmaleimide I (10 µM, Santa Cruz Biotechnology Inc) for 1 hours prior to CFT073 stimulation for 6 hours at MOI 10. Supernatants and mRNA were collected and kept at −80 °C until further analysis.
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5

Raf-1 Phosphorylation Signaling Protocol

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Retinoic acid, concentrated stocks of protease inhibitors, and phosphatase inhibitors were purchased from Sigma Aldrich (St. Louis, MO). PD98059 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The pS621 Raf-1 antibody (PA1-26655) was purchased from Pierce (Rockford, IL). The phosphoserine (ab9332) antibody was purchased from Abcam (Cambridge, MA), and the NFATc3 antibody (sc-8405) was purchased from Santa Cruz Biotechnology. The Raf-1 antibody (610151) was purchased from BD Biosciences (San Jose, CA). The GAPDH (5174), histone H3 (9715), anti-mouse IgG (HRP-linked 7076), p47phox (4301) and anti-rabbit IgG (HRP-linked 7074) antibodies were purchased from Cell Signaling (Beverly, MA).
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6

Analyzing Arthropod-Mediated Inflammatory Pathways

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GCE was purchased from the Arthropods of Medical Importance Resource Bank, Yonsei University College of Medicine (Seoul, Korea). Small interfering RNAs (siRNAs) against AP1, NF-κB, SP1, ETS1, and MMP1 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-TLR2 antibody and anti-phosphorylated and control p44/42 antibodies were purchased from R&D Systems (Minneapolis, MN, USA) and Cell Signaling Technology (Denvers, MA, USA), respectively. The broad-spectrum MMP inhibitor GM6001 and the MAPK/ERK inhibitor PD98059 were purchased from Santa Cruz Biotechnology and Cell Signaling Technology, respectively.
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7

Ebastine Modulates HFDPC Viability

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The 4th through the 10th HFDPC population doublings were seeded at 3 × 104 cells/well in triplicate in 24-well plates. HFDPC were incubated with serum-free basal medium for 18 h and then cultured in medium containing 0.5% fetal calf serum with various concentrations of ebastine in the presence or absence of 5 μM AKT1/2 kinase inhibitor (Santa Cruz Biotechnology, Santa Cruz, CA, USA) or 50 μM PD98059 (Santa Cruz Biotechnology) for an additional 24 h. Cells were cultured in serum-free basal medium or incubated with complete growth medium as negative and positive controls, respectively. A WST-1 assay was used to analyze cell viability. Briefly, 100 μL of WST-1 reagent (Roche Diagnostics, Mannheim, Germany) was added to each well, and the HFDPC were further incubated at 37°C for 4 h. Cells treated with WST-1 were then transferred to a 96-well plate, and the absorbance of each well was measured at wavelengths of 450 and 650 nm in a multifunctional microplate reader (Infinite F200, Tecan, Durham, NC, USA). The percentage of cell viability relative to the vehicle-treated cells was calculated as follows: [(A450–A650) of the drug-treated cells/(A450–A650) of the vehicle-treated cells] × 100%.
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8

Inhibitors of Inflammatory Signaling Pathways

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The recombinant murine IFN-γ and IL-17 were purchased from PeproTech (Rock Hill, NJ, USA). The STAT1 inhibitor fludarabine (Flu), JAK inhibitor AG-490, NF-κB inhibitor SN50, phosphorylated (p-)p38 inhibitor SB203580, p-ERK1/2 inhibitor PD98059 and also antibody against p-p38 MAPK(Thr180/Tyr182) (sc-17852-R) were all supplied by Santa Cruz Biotechnology, Inc. (Shanghai, China). The antibodies against NOS(pan) (#2977), p-STAT1(Y701) (#7649), p-STAT1(S727) (#8826), p-ERK1/2(Thr202/Tyr204) (#4370) and p65 (#8242) were all purchased from Cell Signaling Technology (Danvers, MA, USA). Antibody against STAT1 (#21044-1) was supplied by Signalway Antibody (Baltimore, MD, USA). Antibodies against β-actin (20536-1-AP) and histone H3 (17168-1-AP) were obtained from Proteintech Group (Wuhan, China). The antibody against IκBα (6A920) was purchased from Novus Biologicals (Littleton, CO, USA). Horseradish peroxidase-conjugated goat anti-rabbit (A21020) and goat anti-mouse (A21010) secondary antibodies were both obtained from Abbkine (Redlands, CA, USA).
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9

Immortalized Tubular Epithelial Cell Culture

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Immortalized tubular epithelial cells (HK-2) were cultured in DMEM/F12 medium supplemented with 10% FBS. After synchronization, cells were treated with 20% FSGS patients’ serum (PS) or 40 nM C3a (204881, Merck-Calbiochem). For intervention studies, 1 μM of C3aR antagonist SB290157 (sc-222291, Santa Cruz), 100 μg/ml of eculizumab (Soliris, Alexion Pharmaceuticals), 10 μM of p38 MAPK inhibitor SB203580 (sc-3533, Santa Cruz), 50 μM of ERK inhibitor PD98059 (sc-3532, Santa Cruz), 10 μM of Akt inhibitor MK2206 (sc-364537, Santa Cruz) or 1 μM of U-46619 (sc-201242, Santa Cruz) was given 30 min before treatments. To infect HK-2 cells with plenti-CMV-LOC105375913, plenti-CMV-snail or plenti-CMV-XBP-1s plasmid, the lentiviral stock was mixed with polybrene (1 µg/ml) and added to cells. C/EBPβ siRNA (sc-44251), Elk-1 siRNA (sc-35290), ERα siRNA (sc-29305), GR siRNA (sc-35505), snail siRNA(sc-38398) and XBP-1s siRNA (sc-38627) were bought from Santa Cruz (Dallas, Texas, USA). LOC105375913 siRNA was bought from Thermo fisher (4390771, Carlsbad, California, USA). Transfection of siRNA, miRNA mimics or miRNA antisense oligonucleotide (ASO) was conducted with Lipofectamine 2000.
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10

Inhibition of NF-κB, ERK, JNK, and p38

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NF-κB inhibitor Caffeic acid phenethyl ester (CAPE) was purchased from Sigma. ERK1/2 inhibitor PD98059, JNK inhibitor SP600125 and p38 inhibitor SB203580 were purchased from Santa Cruz.
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