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Jem 1011 tem

Manufactured by JEOL
Sourced in Japan, United States

The JEM-1011 TEM is a transmission electron microscope (TEM) manufactured by JEOL. It is a versatile and reliable instrument designed for high-resolution imaging and analysis of a wide range of materials. The JEM-1011 TEM provides a core function of magnifying and projecting images of specimens onto a fluorescent screen or a camera, allowing users to observe the detailed internal structure and composition of samples at the nanoscale level.

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46 protocols using jem 1011 tem

1

Visualizing Clostridium difficile via TEM

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For visualization of C. difficile cells via Transmission Electron Microscopy (TEM) cells were negatively stained using 1% (w/v) uranyl acetate. C. difficile cultures were inoculated and grown to exponential or stationary phase. Cultures were either used directly for sample preparation, or were previously washed to get rid of media ingredients. Therefore 2 ml liquid culture were centrifuged at 4000 rpm for 5 min, washed with 1 ml 50 mM Tris and centrifuged again. Subsequently, the pellet was resolved in 200 μl Tris. For sample preparation, an EM S160–3 cupper grid was incubated on a droplet of liquid C. difficile culture, or washed cells, for 1 min to allow absorption of cells to the grid’s carbon film. The grid was carefully semi-dried with a filter, preventing crystallization of media ingredients on the carbon film. The grid was washed in a droplet of deionized H2O, filter-dried and negatively stained on a droplet of 1% (w/v) uranyl acetate solution for 15 s. Afterwards the grid was completely dried with a filter and analyzed using a Jeol JEM-1011 TEM.
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2

Nanogel Drug Delivery System Synthesis

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The RGD peptide-modified nanogel called RGD−polyethylene glycol−poly (L-phenylalanine-co-L-cystine) (RGD−PEG−P (LP-co-LC; RGD-NP) and untargeted nanogel called methoxy polyethylene glycol−poly (L-phenylalanine-co-L-cystine) (mPEG−P (LP-co-LC; NP) were prepared by previous method (Li et al., 2018 (link); Ding et al., 2022 (link)), which were provided from the Changchun Institute of Applied Chemistry, Chinese Academy of Sciences. VCR. 20.0 mg of mPEG−P (LP-co-LC) or RGD−PEG−P (LP-co-LC) was first dispersed in 5.0 ml of N,N-dimethylformamide, and then 5.0 mg of vincristine (VCR) was dissolved in the above solution and further stirred for 2 h. Subsequently, 5.0 ml of phosphate buffered saline (PBS) was dropwise added into the above mixture. Finally, the NP/VCR and RGD-NP/VCR were obtained after dialyzed and lyophilization. Transmission electron microscope (TEM) measurements was performed on a JEOL JEM-1011 TEM (Tokyo, Japan). Dynamic laser scattering (DLS) measurements of nanoparticles was performed with a vertically polarized He−Ne laser (DAWN EOS; Wyatt Technology, Santa Barbara, CA, United States).
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3

TEM Imaging of MSC-Derived Extracellular Vesicles

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TEM imaging was conducted for MSC-EV loaded on carbon-coated grids, subjected to negative glow-discharging in an air atmosphere and stained on drops (40 μL) of 1% uranyl acetate solution twice for 30 s each time. Grids were imaged at 80 kV with a JEOL JEM-1011 TEM with digital camera ORIUS SC1000W.
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4

Comprehensive Materials Characterization Protocol

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A powder X-ray diffractometer (RIGAKU Ultima
IV, sample horizontal
type) equipped with a Cu Kα radiation source was used to measure
the XRD patterns of the materials. The morphologies and particle sizes
of the samples were analyzed by a Hitachi S-4000 SEM and a JEOL JEM-1011
TEM. Nitrogen adsorption–desorption measurements were carried
out using a BEL-SORP-miniII (BEL, Japan) apparatus. A Spectrum 100
FTIR spectrometer (Perkin Elmer) equipped with an attenuated total
reflection assembly was used to record the FTIR spectra of the photocatalysts.
XPS analysis was performed on a PHI Quantera SXM photoelectron spectrometer
with an Al Kα radiation source. The DRS of the photocatalysts
were recorded using a Shimadzu UV-2450 spectrophotometer equipped
with an integral sphere assembly. PL spectra of the photocatalysts
were acquired by a Shimadzu RF-5300PC system with an excitation wavelength
of 360 nm. The changes for TOC of the 2-CP solution were analyzed
using a TOC-VE analyzer (Shimadzu, Japan).
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5

Preparation and Characterization of DXM-Loaded Micelles

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The micelles were prepared by dialysis method [38 (link)]. First, the DS-cad-DXM and DXM were dissolved into the DMSO and then slowly added into the deionized water with vigorous stirring. Finally, the solution was dialyzed for 12 h to obtain the micelles of DXM@DS-cad-DXM. The DXM@DEX-cad-DXM micelles were prepared following a similar method and were used as the control.
The diameter, polydispersity index, and zeta potential of the DXM@DS-cad-DXM micelles and DXM@DEX-cad-DXM micelles were analyzed by using a Particle Analyzer (Delsa Nano C, Beckman Coulter, CA, USA). The morphology of DXM@DS-cad-DXM micelles and DXM@DEX-cad-DXM micelles were determined by using a JEOL JEM-1011 TEM (JEOL-100CXII, Ltd., Tokyo, Japan). The critical micelle concentration (CMC) of DXM@DS-cad-DXM micelles and DXM@DEX-cad-DXM micelles were measured by fluorescence spectroscopy. Furthermore, the stability of the micelles was also studied.
The DXM content in DXM@DEX-cad-DXM micelles consists of two parts: one part is a chemically linked DXM, and the other part is encapsulated by micelles. A certain number of micelles were dissolved into an HCl solution and shaken for 6 h to produce DXM. Then, the drug loading of the DXM was determined by HPLC (Flexar, Perkinelmer, Shelton, CT, USA).
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6

Immuno-gold staining for LC3B detection

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Nickel grids with epoxy-embedded ultra-thin sections (75 nm) were used for antigen retrieval. The sections were immersed in target retrieval solution (TRS; Dako, Glostrup, Denmark) and incubated for 15 min at 110°C, then incubated in blocking solution for 20 min. The sections were then incubated with rabbit polyclonal anti-LC3B antibody (Sigma-Aldrich, St. Louis, Missouri, USA; 1:100 in 0.5% BSA, 0.5 M NaCl, with PBS) for 2 h at 55°C. After washing (0.5% BSA, 0.5 M NaCl, 0.1% gelatin, 0.05% Tween-20 in PBS), the sections were incubated for 2 h at 50°C with goat anti-rabbit IgG-conjugated 10 nm gold particles (Aurion, Wageningen, NL; diluted 1:30 in 0.5% BSA, 0.5 M NaCl, with PBS). After washing (0.5% BSA, 0.5 M NaCl, 0.1% gelatin, 0.05% Tween-20 in PBS), all of the sections were counterstained with uranyl acetate in the usual manner. The sections were examined with a JEM-1011 TEM (JEOL, Tokyo, Japan).
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7

Immunoelectron Microscopy of UBR4-V5

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Immunoelectron microscopy experiment was performed as previously described [32 (link)]. UBR4-V5 stably expressing HEK293 cells were fixed in 2% PFA in PBS for 1 h, followed by PBS washing. The fixed cells were collected by scraping and resuspended in 3% gelatin. Solidified gelatin on ice was fixed again with 2% PFA for 15 min. After sequential cryoprotections with 2.3 M sucrose and PVP solution overnight, samples were frozen in liquid nitrogen and were trimmed into 0.5 mm cubes, which were sectioned by cryo-microtome (Leica EM Crion) in 70 nm sections. The primary antibody against V5 was diluted in 0.1 M PBS, supplemented with 0.5% bovine serum albumin (BSA), 0.15% glycine. Secondary antibody, 12nm gold beads labelled donkey anti-rabbit IgG (Jackson ImmunoResearch), was diluted to 1: 25. Sections were incubated with 2.5% glutaraldehyde for 10 min and with 2% Neutral UA acetate for 7 min, followed by incubation in 4% uranyl acetate and methyl cellulose for contrasting and drying. After drying, samples were recorded using JEOL JEM1011 TEM with high resolution AMT digital camera (Peabody, MA).
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8

Transmission Electron Microscopy Imaging of Cells

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Portions of tibialis anterior skeletal muscle were fixed in 2.5%
gluteraldehyde and processed for TEM as previously described (13 (link)). Ultrathin (70nm) sections were imaged
using a JEM 1011 TEM (JEOL, Peabody, MA) at 80kV. Images were taken using a
side-mount AMT 2k digital camera (Advanced Microscopy Techniques, Danvers,
MA).
Cells grown on tissue culture plastic ware were fixed in 2.5%
gluteraldehyde in 100 mM PBS (8 gm/l NaCl, 0.2 gm/l KCl, 1.15 gm/l Na2HPO4.7H2O,
0.2 gm/l KH2PO4, pH 7.4) overnight at 4°C. Monolayers were then washed
in PBS three times then post-fixed in aqueous 1% osmium tetroxide,
1% Fe6CN3 for 1 hr. Cells were washed 3 times in PBS then dehydrated
through a 30–100% ethanol series then several changes of Polybed
812 embedding resin (Polysciences, Warrington, PA). Cultures were embedded in by
inverting Polybed 812-filled BEEM capsules on top of the cells. Blocks were
cured overnight at 37°C, and then cured for two days at 65°C.
Monolayers were pulled off the coverslips and re-embedded for cross section.
Ultrathin cross sections (60 nm) of the cells were obtained on a Riechart
Ultracut E microtome, post-stained in 4% uranyl acetate for 10 min and
1% lead citrate for 7 min.
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9

Characterization of DPNs Embedded in Templates

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The size and shape of all silicon, PDMS, and PVA templates were characterized via Scanning Electron Microscope (Helios Nanolab 650). Ultra-high resolution SEM images were acquired at high vacuum conditions after 10 nm aurum coating using a Q150T ES sputter-coater (Quorum). DPNs still embedded within the PVA templates were observed using an A1 confocal microscope (Nikon) equipped with 63 × oil immersion objective. For EM characterization, a DPNs solution was dried on a carbon-copper grid and coated with 10–20 nm of carbon before Transmission Electron Microscope imaging (JEOL JEM 1011 TEM working at 100 KV). The ζ-potential was calculated using DLS (Malvern, UK).
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10

Ultrastructural Analysis of CpG-Treated Cells

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Cells (5.0 × 104/mL) were seeded in cell culture bottles before being treated on the following day with 10 μg/mL of CpG ODN107 for 12 h, followed by treatment with or without irradiation. After incubation for a further 24 h, cells were collected and fixed in cold 2.5% glutaraldehyde in phosphate buffered saline (PBS). The specimens were post-fixed in 1% osmium tetroxide with 0.1% potassium ferricyanide, dehydrated through a graded series of ethanol (30–90%), and embedded in Epon. Ultrathin sections (65 nm) were stained with 2% uranyl acetate and Reynold’s lead citrate, and imaged using a JEOL JEM-1011 TEM at 80 KV. Images were captured using a side-mount AMT 2k digital camera (Advanced Microscopy Techniques, Danvers, MA, USA).
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