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2 protocols using npc1 sirna

1

MiR-25 Regulation of NPC1 in THP-1 Cells

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THP-1 cells (1.5×106) were seeded in each well of 6-well plates and differentiated with PMA. Then, 50 nM MiR-25 mimic, control mimic, miR-25 inhibitor, inhibitor control, NPC1 siRNA or control siRNA was transfected into cells by using HiPerFect Transfection Reagent (Qiagen, 301705) according to the reagent instructions. Cells were transfected 48 h before collection or further experiments.
MiR-25 mimic (5′-CAUUGCACUUGUCUCGGUCUCUGA-3′), control mimic (5′-UUCUCCGAACGUGUCACGUTT-3′), miR-25 inhibitor (5′-UCAGACCGAGACAAGUGCAAUG-3′), inhibitor control (5′-CAGUACUUUUGUGUAGUACAA-3′), NPC1 siRNA (5′-GAGGUACAAUUGCGAAUAUTT-3′), NFKBIZ siRNA (5′-GCCCGAUUCGUUGUCUGAUTT-3′) and control siRNA (5′-UUCUCCGAACGUGUCACGUTT-3′) were purchased from GenePharma.
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2

Dissecting Neuronal Differentiation and Npc1 Knockdown in PC-12 Cells

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PC-12 cells (CRL1721) were purchased from ATCC and cultured at 37 °C in a humidified atmosphere containing 5% CO2 in RPMI-1640 medium supplemented with 10% horse serum (Sigma, St. Louis, MI) and 5% fetal bovine serum (Invitrogen, Carlsbad, CA). Cells were seeded in Poly-L-lysine (P1524, Sigma) coating glass bottom microwell dishes (MatTek Corporation, Ashland, MA) for two days before differentiation with nerve growth factor (300 ng/ml, Sigma) for 10 days. Npc1 siRNA (Strauss et al., 2010 (link)) (100 pmol, Qiagen, Valencia, CA) and scrambled control siRNA were transfected together with a GFP plasmid (2 μg) immediately before differentiation using the X-tremeGENE-siRNA transfection kit according to the manufacturer instructions (Roche). MMP-12 inhibitor (MMP408, 500 nM, Abcam) (Li et al., 2009a (link); Li et al., 2009b (link)) was added 4 h after transfection. Nine days after transfection, cells were fixed with 2% PFA for 15 min; cells were then examined and imaged using a fluorescence microscope (Nikon Eclipse TE2000-S) and a DS camera from Nikon. Neuritic length was measured as previously described using NIH ImageJ software (Das et al., 2004 (link)). Data were expressed as means of four sets of individual experiments; for each experiment at least 25–26 cells per group were analyzed and averaged values were used to calculate group means.
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