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10 protocols using anti na k atpase

1

Antibody Characterization in Cell Biology

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Mouse monoclonal anti-cortactin (clone 4F11), rabbit polyclonal anti-CYFIP1 antibody, mouse monoclonal anti-ARP2/3 complex antibody (clone 13C9), and rabbit polyclonal anti-TGN46 were purchased from Merck Millipore (Darmstadt, Germany), mouse monoclonal anti-RAC1 and rabbit polyclonal anti-Sec13a were from ThermoFisher Scientific (Waltham, MA, USA), and the antibodies against phosphorylated ERK1/2 (Thr202/Tyr204), total-ERK1/2, total-PAK1, phospho-PAK1/2 (Thr423/Thr402), total p38 MAPK, and the anti-GFP antibody from Cell Signaling Technology Inc. (Danvers, MA, USA). The antibodies against EEA1 and LAMP1 were from BD Biosciences (San Jose, CA, USA). The polyclonal antibody for detecting GM130 was from R&D systems. GFP-Trap resin was purchased from Chromotek GmbH (Martinsried, Germany), the anti-Na+/K+-ATPase and the anti-GAPDH antibodies were from Santa Cruz Biotechnologies (Dallas, TX, USA). All secondary HRP- and Alexa Fluor-labeled antibodies were from ThermoFisher Scientific.
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2

Protein Extraction and Western Blotting

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Proteins were extracted from cell lines or tissue and lysed in GLB+ supplemented with a protease inhibitor cocktail (Bimake) for 20 min on ice, followed by centrifugation (12,000 rpm, 4° C, 15 min). Membrane and cytoplasmic proteins were prepared with the Mem-PER™ Plus Membrane Protein Extraction Kit (Thermo, 89842). Then, 25-60 μg of protein extracts were loaded onto 8-12% electrophoresis gels and transferred to membranes. The membranes were blocked with 5% non-fat milk and subsequently incubated with primary antibodies. The antibodies used were anti-ANXA4 (Proteintech), anti-CAMK2G (Proteintech), anti-HA (Proteintech), anti-FLAG (Sigma), anti-E-cad (Cell Signaling Technology), anti-N-cad (Cell Signaling Technology), anti-Vimentin (Cell Signaling Technology), anti-Snail 1 (Proteintech), anti-β-catenin (Proteintech), anti-Tubulin (Proteintech), anti-GAPDH (Proteintech) and anti-Na+-K+-ATPase (Santa Cruz).
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3

Immunoblot Analysis of Amyloid Precursor Proteins

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Immunoblot analyses were performed as previously described (18 (link)). The following antibodies were used: anti-APP (Millipore, MAB348, 1:1000), anti–APP-CTFs (Abcam, ab32136, 1:1000), anti–amyloid β (6E10) (against the N-terminus of human Aβ; BioLegend, 803001, 1:1000), anti-sAPPβ (BioLegend, 813401, 1:1000), anti–PS1-CTF (Sigma-Aldrich, P5110, 1:500), anti-USP25 (Abcam, ab187156, 1:1000), anti-ubiquitin (Santa Cruz Biotechnology, sc-8017, 1:500), anti-GOLPH4 (Abcam, ab57271, 1:1000), anti-Na+/K+ ATPase (Santa Cruz Biotechnology, sc-21712, 1:500), anti-myc (Thermo Fisher Scientific, 132500, 1:1000), anti-HA (Sigma-Aldrich, H6908, 1:1000), anti-Flag (Sigma-Aldrich, F7425, 1:1000), and HRP-conjugated secondary antibodies (Thermo Fisher Scientific, 31430 or 31460; 1:3,000). A previously described anti-PS1-NTF rabbit polyclonal antibody AB14 (1:1000; ref. 40 (link)) and a previously described anti-BACE1 mouse monoclonal antibody 3D5 (1:1000; ref. 41 (link)) were used.
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4

Immunohistochemical Staining Techniques

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H&E and Masson staining, immunohistochemical and immunofluorescence staining were performed according to an established procedure. The following primary antibodies for immunohistochemical and immunofluorescence staining were used: anti-Acetyl-lysine (cat: 9441, CST), anti-SIRT3 (cat: 2627, CST; cat: 365175, Santa Cruz), anti-Na/K-ATPase (cat: sc-28800, Santa Cruz), anti-FN (cat: F3648, Sigma Aldrich), and anti-Collagen I (cat: 1310-01, Southern Biotech).
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5

Protein Fractionation and Western Blot Analysis

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The cells were washed with precold PBS three times, and total and fractionated cellular proteins were isolated. The cytoplasmic and nuclear proteins were extracted using the Nuclear and Cytoplasmic Protein Extraction Kit (KeyGEN Biotech). The membrane protein was extracted using the Mem-PER™ Plus Membrane Protein Extraction Kit (Thermo Fisher Scientific) according to the manufacturer's protocol. After protein content determination, extracted proteins were separated by using 10% SDS-PAGE gel and then transferred onto nitrocellulose membranes using a Bio-Rad transfer blotting system. The membranes were incubated with primary antibodies against ABCG1 (Proteintech, USA), Nox4 (Santa Cruz Biotechnology, USA), HO-1 (Santa Cruz Biotechnology, USA), Nrf2 (Cell Signaling Technology), and p47phox (Santa Cruz Biotechnology, USA) antibodies. Proteins were visualized using an enhanced chemiluminescence detection system (ECL, Cell Signaling Technology Inc.). Anti-β-actin, anti-lamin B1, anti-Na+/K+ATPase (Santa Cruz Biotechnology, USA) were used to control for equal protein loading.
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6

Localization of ROS-GC1 in HEK Cells

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Localization of ROS-GC1 WT and mutants in HEK cells by immunofluorescence microscopy was done as described before using an Olympus fluorescence microscope (Zägel et al., 2013 (link)). The following primary antibodies were used for detection: anti-ROS-GC1 (1:100; ROS-GC1 (H-225), sc50512, rabbit polyclonal IgG; Santa Cruz Biotechnology), anti-Na+/K+-ATPase (1:200; Na+/K+-ATPase, a (H-3), sc-48345, mouse monoclonal IgG2b; Santa Cruz Biotechnology), and anti-calnexin [1:200; calnexin (E-10), sc-46669, mouse monoclonal IgG2a; Santa Cruz Biotechnology]. Secondary antibodies were donkey anti-rabbit conjugated to Fura350 (dilution 1:200) from Invitrogen and goat anti-mouse conjugated with Dylight594 from Thermo Scientific, USA used in a dilution of 1:500. Incubation and washing buffers were exactly as described (Zägel et al., 2013 (link)).
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7

Antibodies and siRNA Sequences for Ezrin Study

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Antibodies against ezrin, ezrin pT567, acetylated-Lysine, and α-tubulin (DM1A) were purchased from Cell Signaling Technology. Anti-Na,K-ATPase and anti-GFP antibodies were purchased from Santa Cruz Biotechnology. Anti-FLAG-tag (M2) antibody was from Sigma. Phalloidin was purchased from Invitrogen, and ezrin pS66 antibody was described before (Yu et al., 2014 (link); Fang et al., 2017). The PCAF siRNA and ezrin siRNA sequence were described before (Ding et al., 2010 (link); Xia et al., 2012 (link)).
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8

Protein Extraction and Western Blot Analysis

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Cells were lysed in ice-cold lysis buffer (10 mM Tris-HCl, pH 7.8, 100 mM NaCl, 10 mM EDTA, 0.5% Nonidet P-40, and 0.5% sodium deoxycholate) supplemented with protease and phosphatase inhibitors. Homogenates were maintained in ice for 30 min and centrifuged at 15 000 × g for 10 min at 4 °C, and the supernatant was recovered. Protein concentration was determined by BCA protein assay kit (Life, New York, NY, USA). Proteins were resolved in SDS-PAGE (10% polyacrylamide), transferred to PVDF membrane, and incubated with primary antibodies. The reactions were followed by incubation with peroxidase labeled secondary antibodies (Life). Primary antibodies used were: anti-RIPK1 (1:800, Abcam), anti-RIPK3 (1:800; Abcam), anti-MLKL (1:1000, Abcam), anti-β-actin (1:5000, Abcam), anti-Na+-K+-ATPase (1:400; Santa Cruz, Santa Cruz, CA, USA), anti-CaMKIIδ (1:800, GeneTex), anti-p-CaMKII (1:800, Thermo), and anti-ox-CaMKII (1:600; Millipore, Bedford, MA, USA). CaMKII activation was assessed by measuring phosphorylation and oxidation levels.
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9

Protein Extraction and Western Blot Analysis

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Total protein extraction and Western blot analysis were performed, as previously discussed [67 (link), 68 (link)]. For MCT4 analysis, cell membrane proteins were isolated using the Subcellular Protein Fractionation Kit for Cultured Cells (Thermo Fisher Scientific) according to the manufacturer’s protocol. Different ice-cold buffers were employed to sequentially separate cytoplasmatic, membrane, soluble nuclear, chromatin-bound nuclear, and cytoskeletal extracts. The following antibodies were used: anti-MCT4 (Santa Cruz Biotechnology and GeneTex sc-376140), anti-GLUT-1 (Santa Cruz Biotechnology sc-377228), anti-Na+/K+ ATPase (Santa Cruz Biotechnology, sc-48345), and anti-β-actin (Sigma-Aldrich- clone AC-15, ascites fluid). Secondary antibodies were goat anti-rabbit and anti-mouse IgG (ImmunoReagents, INC GtxRB-003-DHRPX, GtxMu-003-DHRPX). Protein levels were quantified by densitometric analysis via ImageJ software. Fold change was calculated over control.
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10

Rat Myocardial Myoblast Culture

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Cell culture and reagents H9c2 cells, which are myoblasts cells from rat myocardium, were purchased from the American Type Culture Collection. H9c2 cells were cultured with Dulbecco's modi ed Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS) and penicillin (50 IU/mL)/streptomycin (50 μg/mL). A 0.25% (w/v) Trypsin-0.53 mM ethylenediaminetetraacetic acid (EDTA) solution was used to passage cells. Cells were cultured in humidi ed air with 5% CO 2 at 37°C. FBS and EDTA were purchased from Gibco (NY, USA). The 5,58,6,68-tetraethylbenzimidazolcarbocyanine iodide (JC-1), Ro-32-0432, and diphenyleneiodonium chloride (DPI) were purchased from Sigma (MO, USA). Dihydroethidium (DHE) was obtained from Thermo Scienti c (MA, USA). Anti-β-actin, anti-phospho-AMPK, anti-AMPK, anti-Nox-2, anti-Rac-1, anti-phospho-PKC, anti-PKC, anti-phospho-p53, anti-Bax, anti-Bcl2, anti-cytochrome c, anti-Na/K ATPase, and anti-PGC-1a were all obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Horseradish peroxidase (HRP)-conjugated anti-rabbit and anti-mouse secondary antibodies were purchased from Transduction Laboratories (CA, USA).
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