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5 protocols using eclipse e800

1

Optimized Confocal Imaging Protocols

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Images were acquired using Nikon Eclipse 90i (confocal imaging), Nikon Eclipse E800 (epifluorescence and DIC imaging) or Leica MZFLIII (stereomicroscope). Post-processing of images was performed using ImageJ (NIH) by manipulating brightness and contrast to visualize the signal better; the same adjustment was applied to all the images for a specific marker to prevent bias.
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2

Assessing Oxidative Damage in Cells

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In order to establish the potential oxidative damage to cells and tissues, histochemical analyses with diaminobenzidine (DAB) and dichlorodihydrofluoresce in diacetate (DCFDA-SIGMA D6883) were performed. For DAB staining assays, small thallus sections of 1 mm to 5 mm were made and the samples were placed in DAB (pH 7.0, 0.5 g L−1) overnight, then dehydrated in 100% ethanol and observed under a light optical microscope. The qualitative damage was observed by the presence of DCF oxidised under a Nikon Eclipse E800 fluorescence microscope with a Leica DC 350FX camera. The emission of DCF oxidised registered in the range of 530 nm using a Synergy™ HTX Multi-Mode Microplate Reader; fluorescence was measured in terms of the intensity of the fluorescence emitted [62 (link)]. DCF fluorescence intensity was recorded using plants discs of 5 mm in diameter. Plants grown without the contaminant, but with and without DCFDA, were used as control treatments. The plant discs of each treatment were placed in 96-well microplates and excited at 485 nm. An overlap showing the fluorescence of both chlorophyll and DCF was made without the red light filter to observe the specific location of the ROS.
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Fluorescence Microscopy Imaging Protocol

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Samples were imaged using a Nikon Eclipse E800 or Leica DM6000B fluorescence microscope and Zeiss LSM 710 or LSM 510 and Leica SP8 Falcon confocal microscope. Figures were assembled in Adobe Photoshop CS4. Images presented in the figures are raw data images processed for orientation and cropped to size and pixel density with the following exception: In Figure 2 and Supplementary Figures 9, 11, the image brightness was increased to better visualize the data.
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Immunofluorescent Staining of iECs

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iECs were fixed with 4 % paraformaldehyde/phosphate-buffered saline for 10 min at room temperature, then blocked with 5 % bovine serum albumin. Cells were stained overnight with primary antibodies to PECAM (5 μg/ml, R&D Systems) and VE-Cadherin (2 μg/ml, R&D Systems). Secondary antibodies were from Life Technologies: Alexa488-conjugated goat anti-mouse IgG (1:500) and Alexa555-conjugated goat anti-rabbit IgG (1:500). Nuclei were stained with DAPI in the ProLong® Gold Antifade (Life Technologies) mounting media. Images were taken using a light microscope (Nikon Eclipse E800 or Leica DMI 4000B).
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5

Quantifying CD68 and α-SMA expression

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IHC was performed and analysed as previously described (Birch et al., 2015). Antibodies against CD68 (Polyclonal Antibody (1:100, aviva system biology OABB00472)) and α‐SMA were applied overnight at 4°C. Staining was analysed with a NIKON ECLIPSE‐E800 microscope, and images were captured with a Leica DFC420 camera using the LAS software (Leica). Staining was quantified in a blinded fashion on 10 random images captured per tissue section.
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