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11 protocols using t butyl hydroperoxide

1

Measuring Selenium-Dependent Glutathione Peroxidase in Mouse BALF

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Selenium-dependent glutathione peroxidase activity in mouse BALF was measured by monitoring fluorescence at 460 nm with an excitation wavelength of 355 nm in a Berthold plate reader (Tristar LB941, Bad Wildbad, Germany)69 (link). Reactions were performed in 50 mM sodium phosphate buffer pH 7.0 containing 0.1% Triton-X-100, 0.40 mM EDTA, 0.20 mM NADPH, 0.25 U glutathione reductase from Baker’s yeast, 1 mM L-glutathione, and 100 μM t-butyl hydroperoxide (all Sigma-Aldrich) in a total volume of 200 μl. Reactions were started by adding 50 μl mouse BALF. 50 μl phosphate-buffered saline was used as negative and 0.01 U bovine GPX (Sigma Aldrich) as positive control, respectively. Data are reported as activity fold changes relative to the median of control activity for each time point (n = 29).
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2

Oxidative Stress Sensitivity Assay

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To investigate sensitivity to oxidative stress after EHPP or SDP supplementation, N2 adults were transferred onto plates that included 6.2 mM t-butyl hydroperoxide (Sigma-Aldrich) in nematode growth medium agar. Worms were incubated on these plates at 20°C and scored as dead when they did not respond to repeated prodding with the worm picker.
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3

Antibody-based IL-6 Quantification

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Digitonin, sucrose, cresyl violet, glutathione reductase (GR), β-nicotinamide adenine dinucleotide phosphate (NADPH), D-mannitol, t-butyl hydroperoxide, ethylenediaminetetraacetic acid (EDTA), bovine serum albumin (BSA), ethylene glycol-bis (2-aminoethylether)-N,N,N,N′-tetraacetic acid (EGTA), HEPES, sodium orthovanadate, protease inhibitor cocktail, and anti-mouse IgG peroxidase conjugated secondary antibody were purchased from Sigma-Aldrich (St. Louis, MO, USA). Tris hydrochloride (Tris-HCl), Triton x-100, tween-20, and sodium dodecyl sulfate (SDS) were purchased from Bio-Rad Laboratories, Inc. (Hercules, California, USA). Mouse monoclonal anti-IL-6 antibody was purchased from Abcam (Abcam, MA, USA).
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4

Antioxidant Status Monitoring in ACS

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In 23 out of 29 enrolled ACS patients, additional blood samples were collected at 24 hours, 1 week, and 1 month after administration of dual antiplatelet therapy for the assessment also of reduced and total aminothiols, Hcy, and GSH, and the activities of GSH peroxidase type-1 (GPx-1). Blood reduced GSH (r-GSHbl) level was determined by prompt acidification of whole blood immediately after blood sample collection according to method previously described [14 (link)]. As reduced GSH levels in plasma are low (1-2%), the reduced GSH concentration in whole blood can reflect GSH content inside the cellular fraction of blood. Plasma reduced and total forms of Hcy and blood total GSH were determined according to methods validated in our laboratory [14 (link)]. The total form of GSH measured in our study includes the oxidized GSH, all conjugated forms of GSH (protein-bound GSH and GSH-mixed disulfides), produced through oxidative processes or thiol-disulfide exchange reactions, and reduced free GSH. Thiol separation was performed by high-performance liquid chromatography (HPLC) method (ProStar-Varian, Surrey, UK). Erythrocyte GPx-1 was determined using t-butyl hydroperoxide (SIGMA, Steinheim, Germany) as substrate [21 (link)]. GPx-1 activities were determined in diluted purified red blood cells, stored frozen up to analysis which was performed within 1 month from storage.
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5

Cytotoxicity Assay of Chemical Compounds

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4-Cyanobenzaldehyde, benzil, 4-bromobenzoic acid, bis(pinacolato)diboron, 1,1′-carbonyldiimidazole (CDI), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)dichloride (PdCl2 (dppf)), H2O2, potassium super-oxide (KO2), t-butyl hydroperoxide (TBHP), m-chloroperoxybenzoic acid (mCPBA), hypochlorous acid (HOCl), HEPES buffer solution, Whatman papers, Dulbecco's phosphate-buffered saline (DBS), Roswell Park Memorial Institute (RPMI) medium, fetal bovine serum (FBS), penicillin, streptomycin, and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ammonium acetate, acetic acid, ethanol, hydroxylamine hydrochloride, sodium hydroxide, ethyl acetate, hexane, sodium bicarbonate, dimethylformamide (DMF), dimethyl sulfoxide (DMSO), 1,4-dioxane, and potassium acetate were purchased from Daejung Chemicals (Siheungsi, Kyunggido, Republic of Korea). Sodium nitrate (NaNO3), potassium perchlorate (KClO4), sodium sulfate (Na2SO4), sodium nitrite (NaNO2), and benzoyl peroxide (BPO) were obtained from AccuStandard (New Haven, CT, USA). The MCF-7 cells were purchased from the Korean Cell Line Bank (Seoul, Republic of Korea). All reagents were used as received without further purification.
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6

Disc Diffusion Assay for Oxidative Stress

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For disc diffusion assays, approximately 108 mid-log-phase bacterial cells were mixed with LB broth containing 0.5% agar and poured on top of LB agar plates. After solidification of the overlay, a sterile 7 mm paper disc was placed in the center of plate. 7 μl of either 30% H2O2, 0.5 M organic hydroperoxide solutions of t-butyl hydroperoxide (TBHP)(Sigma), menadione (MD)(MP Biomedicals) or cumene hydroperoxide (CHP)(Sigma) was applied to each filter disc. The plates were incubated at 37 °С for 8 hrs and the diameter of the inhibition zone was measured for each strain. To quantify the sensitivity of different V. cholerae mutants to ROS, exponential phase cultures of ΔaphB complemented with vector control, PBAD-aphBwt and different cysteine-to-serine mutants were incubated in LB containing 0.1% arabinose with or without 20 μM CHP at 37°C for 30 mins. Survival rate was determined by CFU count of cultures with CHP divided by CFU of cultures without CHP.
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7

Evaluating Antioxidant Potential

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EA, 4-HIA, epinephrine, reduced glutathione (GSH), GSH reductase, thiobarbituric acid (TBA), t-butyl hydroperoxide, guanidine hydrochloride, 1,1,3,3-tetramethoxy propane (TMP), and nicotinamide adenine dinucleotide phosphate (NADPH) were procured from Sigma (St. Louis, MO, USA). All other chemicals were of analytical grade and solvents were of spectral grade and were procured from Himedia Chemicals (Mumbai).
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8

Antioxidant Capacity Evaluation Protocol

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Bicinchoninic acid (BCA) solution, bovine serum albumin (BSA), t-butyl hydroperoxide (t-BHP), butylated hydroxytoluene (BHT), CCl4, 1,1-diphenyl-2-picrylhydrazyl (DPPH), formalin, sodium carboxymethylcellulose (CMC), 2′,7′-dichlorofluorescin diacetate (DCFDA), phosphoric acid, trichloroacetic acid (TCA), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromides (MTT), and Trolox were obtained from Sigma-Aldrich Co. 2-Thiobarbituric acid (TBA) was obtained from Tokyo Chemical Industry Co. Malondialdehyde (MDA) tetrabutylammonium salt was obtained from Fluka. Oligonol is commercially available (Amino Up Chemical Co., Ltd., Sapporo, Japan).
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9

Cyn Oxidation Reaction Protocol

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Cyn was supplied by MedChemExpress (USA). Dimethyl sulfoxide (DMSO) and t‐butylhydroperoxide (TBHP) purchased from Sigma (USA).
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10

Comprehensive Phenotypic Assays for Yeast

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Phenotypic plate assays were performed on YNB (without amino acids and ammonium sulfate) media supplemented with 2% glucose and 10 mM ammonium sulfate unless stated otherwise. For UV sensitivity, cells were spotted then exposed for 6 sec to UV light at 48 mJ/cm2 in a UV Stratalinker (Stratagene, USA). For all other assays, the stressor was added to the media immediately prior to pouring at the following concentrations: 0.001% SDS (Sigma, USA), 5 μg/mL fluconazole (Sigma, USA), 0.25 μg/mL itraconazole (Sigma, USA), 1 μg/mL fenpropimorph (Sigma, USA), 1 M NaCl (Sigma, USA), 1 M KCl (Sigma, USA), 125 mM t-butyl hydroperoxide (Sigma, USA), 1 mM NaNO2 (Sigma, USA), 1 μg/mL cyclohexamide (Sigma, USA) and 1 mM mercaptopurine (Sigma, USA). Tenfold serial dilutions were prepared immediately prior to testing, with plates being imaged at 24–96 hr. All assays were performed at both 30 and 37 °C.
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