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8 protocols using coelenterazine

1

Luciferase Assay of TGIF1 Transcriptional Activity

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All luciferase reporter constructs were generated in pGL3 basic (Promega) by PCR from genomic DNA. Cells were transfected with firefly luciferase reporters and a phCMVRLuc control (Promega), with pCMV5 TGIF1 as indicated (2, 6, 18 ng per well), using PEI. The two mutant TGIF1 constructs encode TGIF1 with changes in conserved DNA-binding residues in the homeodomain: either Arg91 altered to methionine (R91M) or Asp88 altered to serine (N88S) (Bjerke et al. 2011 (link)). After 48 h, activity was assayed with luciferase assay reagent (Biotium) using a Berthold LB953 luminometer. Results were normalized using Renilla luciferase activity and assayed with 0.09 μM coelenterazine (Biosynth) as in Hyman-Walsh et al. (2010) (link). Results of replicate transfections are shown (N = 3; mean + standard deviation) normalized to the RLuc transfection control.
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2

Characterization of GPCR Phosphorylation Dynamics

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Coelenterazine was purchased from Carbosynth. Linear polyethylenimine (PEI, 25 kDa) was supplied by Polyscience. FuGENE® HD Transfection Reagent, furimazine (NanoGlo®), HaloTag® NanoBRET™ 618 ligand and T4 DNA ligase were from Promega. Phosphosite-specific antibodies pS355/pS356-β2 (Cat. no.: 7TM0029A) and pT360/pS364-β2 (Cat. no.: 7TM0029B) were from 7TM Antibodies, and the antibody against pS261 (Cat. no.: PA5-12977) was from Invitrogen. Anti-HA-tag antibodies were purchased from Cell Signaling Technology. Hanks balanced salt solution (HBSS), Dulbecco’s modified Eagles’s medium (DMEM), Lipofectamin 2000, HA-beads, TetraSpeck fluorescent beads, 96-well white polystyrene LumiNunc microplates, all antibiotics and pertussis toxin (PTX) were from Thermo Fisher. The HTRF cAMP accumulation kit and the DERET substrate, SNAP-Lumi4-Tb, were purchased from Cisbio. SNAP-Surface Alexa Flour 488, SNAP-Surface Alexa Flour 549, SNAP-Surface Alexa Flour 649, Q5® High-Fidelity polymerase, NotI-HF®, ApaI, anti-SNAP-tag antibody (Cat. no.: P9310S) were obtained from New England Biolabs (NEB). Effectene was from Qiagen. All other chemicals and compounds were from Sigma Aldrich. TopSeal-A PLUS, Dihydroalprenolol Hydrochloride ([3H]-DHA, 250µCi, 9.25MBq), WGA PVT 500 MG SPA Beads, and OptiPlate-96, and White Opaque 96-well Microplates were from Perkin Elmer.
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3

In vivo Bioluminescence Imaging

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In vivo imaging was performed using a Xenogen IVIS 200 (Caliper Lifescience). A maximum of five anesthetized mice were imaged at once. Each mouse received an i.v. injection of freshly prepared coelenterazine (Biosynth) that was dissolved in DMSO (Sigma-Aldrich) and diluted in PBS (100 µg/100 µl per mouse; Charo et al., 2011 (link)). Images were acquired for 1 min using small binning. All data were analyzed using Living Image analysis software (Caliper Lifescience). The region of interest for the measured signal was drawn at the tumor site identically for all mice and was set anew for each experiment.
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4

Screening of ORco Agonists and Repellents

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ORco agonists, repellents, and the 50 VOCs analyzed in the current study are presented in Table S1. Carvacrol (CRV), linalyl acetate (LA), (2E,4E)-2,4-octadienal (OCT), and (1S)-3-carene (CAR) were purchased from Sigma Aldrich; isopropyl cinnamate (IPC) from Alfa Aesar; cumin alcohol (CA) from Acros Organics; N-(4-ethylphenyl)-2-{[4-ethyl-5-(3-pyridinyl)-4H-1,2,4-triazol-3-yl]thio}acetamide (ORco Receptor Agonist Molecule 2, ORcoRAM2) from Asinex Corporation and Vitas M Chemical Ltd; N-(4-ethylphenyl)-2-{[4-ethyl-5-(3-pyridinyl)-4H-1,2,4-triazol-3-yl]thio}acetamide (VUAA1) from Innovapharm Ltd; N,N-diethyl-3-methylbenzamide (DEET) from Sigma-Aldrich; and coelenterazine from Biosynth. Initial stock solutions for ORcoRAM2 and VUAA1 were prepared as needed in dimethyl sulfoxide (DMSO) and stored at −20 °C, whereas initial stocks of VOCs and coelenterazine were prepared in ethanol as needed and stored at −20 °C. For the insect cell–based screening assay, working solutions were prepared in modified Ringer's buffer (25 mM NaCl, 190 mM KCl, 3 mM CaCl2, 3 mM MgCl2, 20 mM Hepes, 22.5 mM glucose, pH 6.5; 35), so that the final DMSO concentrations did not exceed the range of 0.2% to 0.35%.
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5

YAP1-Dependent Luciferase Assay

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Cells were transfected with the 8×GTIIC-luc firefly luciferase reporter and a phCMVRLuc control (Promega, Madison, WI), with pcDNA Flag Yap1 as indicated, using PEI. After 48 hours, activity was assayed with luciferase assay reagent (Biotium) using a Berthold LB953 luminometer. Results were normalized using Renilla luciferase activity, assayed with 0.09μM coelenterazine (Biosynth, Naperville, IL), as in [51 (link)]. Results of replicate transfections are shown (N=3–6, mean plus standard deviation) normalized to the RLuc transfection control. The YAP1-luc reporter was a kind gift from Dr. R. Janknecht (University of Oklahoma) [52 (link)], and mutant versions were generated within this plasmid by PCR.
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6

Calcium Signaling Monitoring in Seedlings

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Seedlings were initially grown on 1/2 MS plates for 3 days before being transferred to 96-well plates (655075, Greiner Bio-One) in 100 μL liquid MS for 5 days. The evening before calcium measurements the liquid MS was replaced with 100 μL 20 μM coelenterazine (EC14031, Carbosynth) and the seedlings incubated in the dark overnight. The following morning the coelenterazine solution was replaced with 100 μL water and rested for a minimum of 30 min in the dark. Readings were taken in a VARIOSKAN MUTIPLATE READER (ThermoFisher) before and after adding 50 μL of 3×concentrated elicitor solution or mock. For each well readings were normalised to the average RLU value before elicitor addition (L0).
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7

Aequorin-based calcium signaling assay

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Coelenterazine (#C-7001, www.biosynth.com)was prepared by dissolving in ice cold methanol (MetOH) under a protective atmosphere in complete darkness to a concentration of 10 µg/µl. Stocks were diluted to the working concentration of 3.175 µg in 10 µl MetOH, 74.78 µM.
Conidia were diluted to a concentration of 1 X 10 6 in 10% VM, Coelenterazine was added to a final concentration of 2.5 µM. 100 µl of conidial suspension was used per well of a white microtitre plate and the plates incubated at 25°C in the dark for 6 hours. The light output of aequorin was measured by counting the photons emitted by a single well over one second, each well in a row of six being measured once every cycle of 7 seconds. After recording baseline luminescence, a single row was treated with PAF26 and the light output measured over time. Following this the second row was run with 100 µl 3M CaCl 2 :20% ethanol (EtOH) injected on cycle 8 to immediately discharge all the aequorin.
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8

In Vivo Bioluminescence Imaging

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Renilla luciferase (RLuc) activity was detected by retro-orbital (ro.) injection of 100 µl of coelenterazine at 1 mg/ml (Biosynth), dissolved in 30% DMSO (Sigma-Aldrich,), 70% PBS (MgCl 2 and CaCl 2 free (Invitrogen)), followed by direct measurement with the IVIS ® 200
Imaging System for 1 minute, using small binning. Firefly luciferase (FLuc) activity was detected by injecting intravenously 100 µl of D-luciferin at 30 mg/ml (Biosynth), dissolved in PBS. Measurement was taken for 1 to 60 seconds using small or medium bining. Data analysis was performed using Living Image 2.6 and Living Image 4.0 software. The signal strength is depicted by a pseudocolor scale given in photon/second/cm 2 /steradian (p/s/cm 2 /sr).
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