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4 protocols using chemiluminescent detection reagent

1

Western Blot Analysis of Signaling Pathways

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Whole lysates were harvested using a Radioimmunoprecipitation Assay (RIPA) buffer containing protease inhibitor cocktail (Sigma-Aldrich), 1 mM phenylmethylsulfonyl fluoride, and phosphatase inhibitor cocktail set III (Calbiochem, CA, USA). Nuclear extracts were prepared using a nuclear extract kit (Active Motif, Carlsbad, CA, USA.). Equal amounts (20 μg) of protein were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Amersham Biosciences, Piscataway, NJ, USA), which were blocked with 5% skim milk in TBS/T (Tris buffered saline in 0.1% TWEEN® 20) buffer for 1 h. The membranes were then treated overnight with antibodies specific to iNOS, NF-κB p65, HO-1, NRF2, phospho-CREB, CREB, phospho-p38 (Thr180/Tyr182), p38, phospho-Erk (Thr202/Tyr204), Erk, phospho-JNK (Thr183/Tyr185), JNK, phospho-Akt (Ser473), and Akt (Cell Signaling Technology, Beverly, MA). Blots were incubated with horseradish peroxidase- (HRP-) conjugated secondary antibody for 1 h at room temperature. HRP was detected using a chemiluminescent detection reagent (Amersham Biosciences). β-actin (Sigma-Aldrich) and proliferating cell nuclear antigen (PCNA; Cell Signaling Technology) were used as loading controls. Chemiluminescence was visualized using an LAS-3000 LuminoImage analyzer (Fujifilm, Tokyo, Japan) [23 (link)].
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2

Western Blot Analysis of Hippocampal Proteins

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The hippocampus was homogenized in 300 μl lysis buffer (Pro-Prep™; Intron Biotechnology, Korea) containing 1 mM PMSF and 1 μg·ml−1 of protease inhibitor mix. Equal amounts (20 μg) of protein were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Amersham Biosciences, Piscataway, NJ, USA). The membranes were then blocked in 5% skim milk in Tris-buffered saline with 0.1% TWEEN® 20 (TBS/T) for 1 h. The membranes were probed overnight with antibodies for brain-derived neurotrophic factor (BDNF; Abcam, Cambridge, UK), phosphorylated cAMP response element-binding protein (p-CREB), and CREB (Cell Signaling Technology, Inc., Danvers, MA, USA) at 4°C. Next, blots were incubated in horseradish peroxidase- (HRP-) conjugated secondary antibody for 1 h at 25°C, and HRP was detected using a chemiluminescent detection reagent (Amersham Biosciences). β-Actin (Sigma-Aldrich) was used as a loading control [24 (link)].
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3

Chemokine Profiling of Necrotic Cell-Treated Cells

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Chemokines secreted by necrotic cells-treated CRT-MG were screened using commercially available protein array systems (Proteome profiler™ Arrays, #ARY017, R&D Systems) according to the manufacturer's instructions. The array consists of 31 different human chemokines spotted in duplicate onto a membrane. CRT-MG cells were either untreated or treated with necrotic cells for 24 h, and then 1 ml of the supernatant and detection antibody mixture were incubated at room temperature (RT) for 1 h. Then, the prepared mixtures were added on each membrane at 4°C for overnight, and streptavidin-HRP was treated into each membrane for 30 min at RT on a rocking platform shaker. Membranes were exposed to blue X-ray film (AGFA, Mortsel, Belgium) by using chemiluminescent detection reagent (Amersham, Buckinghamshire, UK) for 3-5 min. The relative level of chemokine expression was measured by the changed spot intensity divided by control spot intensity, using Image J software (NIH, Bethesda, Maryland, USA; http://rsb. info.nih.gov/ ij/).
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4

Cytokine Profiling of LPS-Induced Retinal Changes

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One day after the administration of LPS (n=4 animals/ each conditions), retinas were dissected and kept at -80 °C until tested. Proteome Profiler Mouse Cytokine Array Kit, Panel A from R&D System (Biomedica, Budapest, Hungary) was used for the analysis. The array is based on antibodies binding with nitrocellulose membranes and it was performed as described by the manufacturer. Samples were pooled and homogenized in PBS with protease inhibitors.
After homogenization, Triton X-100 was added to a final concentration of 1%. The nitrocellulose membranes were blocked and incubated with reconstituted detection antibody cocktail. Membranes were incubated overnight with 400 µg protein containing homogenates.
After washing and streptavidin-horseradish peroxidase addition to the membranes, plates were spread to a chemiluminescent detection reagent (Amersham Biosciences, Hungary). Developed films were scanned and the mean intensities of the dot blots of the different cytokines were calculated by ImageJ software (NIH).
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