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56 protocols using hm340e

1

Immunohistochemical Analysis of Human Brain Tissue

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Human brain tissues were fixed in 4% paraformaldehyde at room temperature for 48 h and embedded in paraffin and cut into sections. The thickness of sections used for immunohistochemical staining was 6-µm and these sections were cut using a paraffin section machine (cat. no. HM340E; Thermo Fisher Scientific, Inc.). After paraffin sections were deparaffinized at 65°C for 2 h, hydrated with 100/95/75% ethanol for 10 min each, antigen recovery was performed by exposing sections to 0.01 mol/l citrate buffer (pH 6.0) at 100°C for 20 min. Endogenous peroxidase was removed by treatment with 3% H2O2. Samples were blocked with 1% BSA (Amresco, LLC) at room temperature for 1 h and were then incubated with primary antibodies at 37°C overnight. Following 3 washes with PBS, the sections were incubated with secondary antibody for 1 h at room temperature. DAB (Wuhan Servicebio Technology, Co., Ltd.) was used for dyeing and the nuclei were stained by hematoxylin at room temperature for 30 sec. Images were captured with an Olympus BX51 fluorescence microscope (Olympus Corporation).
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2

Histological Analysis of Lymph Nodes

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For histological analysis, fixed lymph nodes were dehydrated in 100% ethanol and embedded in paraffin (Leica) using a Leica EG1150 tissue embedder. 7-μm-thick sections using a HM340E Thermo Scientific microtome were processed for hematoxylin-eosin (HE) (Leica) and immunohistochemistry staining as described (41 (link)). For immunohistochemistry of histology slides the following antibodies were used: anti-TER-119 (R&D Systems, MAB1125) and Alexa Fluor 488 conjugated goat anti-rat IgG antibody (Life Technologies A11006). Stained slides were mounted with Vectashield DAPI Mounting Medium (Vector Laboratories, H-1200). Tissue section samples were imaged using a Nikon Ni-U upright microscope (Nikon Instruments) using a 40x dry objective connected to a Nikon DS-Ri2 camera.
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3

Histological Analysis of Cell Cultures

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After harvesting, samples from cell cultures were fixed immediately in FAA (3.7%: formaldehyde: 50% ethanol: 5% acetic acid) by vacuum infiltration, dehydrated, embedded in paraffin wax and sectioned at 8 µM thickness with a HM 340E rotary microtome (Microm, Thermo Scientific, Walldorf, UK). To correlate MALDI mass spectrometry with the histological analysis, the sections mounted onto microscopic slides were double-stained with hematoxilin and alcian blue and images were captured using AxioImager A1 microscope (Carl Zeiss, Jena, Germany).
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4

Histological Analysis of Mouse Heart Tissue

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Mouse hearts were fixed in buffered formalin and embedded in paraffin (ThermoFisher). Tissue sections of 5 μm were cut with a microtome (HM340E, Thermo). Sections were deparaffinized in xylene (AppliChem), rehydrated with an alcohol series (100–70% ethanol, AppliChem) and stained with Haematoxylin (AppliChem) and Eosin Y (Carl Roth), followed by dehydration through an alcohol series (70–100% ethanol, AppliChem). Sections were mounted (Cytoseal, ThermoFisher) and imaged with a brightfield microscope (Nikon Eclipse Ci).
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5

Immunostaining of HIF1α and Cell Markers

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The tissue specimens were immersed in formalin for 24 hours, and then embedded in paraffin and sectioned (paraffin microtome, HM340E, Thermo FIsher Scientific). After deparaffinization and antigen retrieval, the slides were blocked with 10% normal goat serum for 30 minutes at room temperature, and incubated with anti-HIF1α (36169T, Cell Signaling Technology) antibody solution for 24 hours at 4°C with gentle shaking. The images were scanned with a pathology section scanner (Pannoramic MIDI) after DAB staining. For dual immunofluorescent staining, mouse anti-CD31 (GB12063, Servicebio) antibody was incubated with rabbit anti–α-SMA (GB111364, Servicebio), anti–claudin 5 (GB11290, Servicebio), and anti-desmin (GB11081, Servicebio) antibody solution for 24 hours at 4°C with gentle shaking. The images were scanned after incubation with mouse-derived (red) and rabbit-derived (green) fluorescent secondary antibodies. The staining intensity was analyzed with ImageJ (NIH).
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6

Histopathological and Immunochemical Analysis of Porcine Intestinal Tissue

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After the autopsy, the small intestines (duodenum, jejunum, and ileum) were fixed in 10% formalin and embedded in paraffin according to standard procedures. Formalin-fixed paraffin-embedded tissue blocks were sectioned into 5–8 um thicknesses using a standard rotary microtome (HM-340E; Thermo Fisher, Waltham, MA, USA) and placed on slides. The tissues were deparaffinized using xylene and treated in ethanol (100%, 90%, 70%, and 50%) for 5 min each. The tissue sections were then stained with hematoxylin and eosin (H&E) for histopathology. For immunochemistry, antigen retrieval was conducted using citrate buffer (pH 6.0) at 95 °C for 30 min and at room temperature for 20 min. Subsequently, the sections were incubated with anti-PEDV monoclonal antibody (Median diagnostic, Chuncheon-si, Republic of Korea) overnight at 4 °C. The samples were then labeled with horseradish peroxidase-conjugated anti-rabbit and anti-mouse immunoglobulin G antibodies (Vector Laboratories, Newark, CA, USA) and developed using the 3,3′-diaminobenzidine (DAB; Vector Laboratories, Newark, CA, USA) according to the manufacturer’s instructions. The samples were counterstained with methyl-green, and all slides were visualized and imaged using a light microscope (BX53, DP80; Olympus, Tokyo, Japan).
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7

Histological Analysis of Fish Tissues

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Histological examination was performed as described previously (Pei et al., 2021 (link)). Tissues collected from the spleen, liver, head kidney, and intestines of control and XX2021-injected fish were fixed with 4% paraformaldehyde for 12 h, submerged in 70% alcohol, dehydrated in tertiary butyl alcohol (10%–100%), and embedded in paraffin. Thereafter, paraffin-embedded tissues were cut into 5-μm-thick sections using a microtome (Thermo HM340E, American) and then stained with hematoxylin and eosin. The histological slides were examined with a light microscope (Olympus BX51, Japan).
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8

Histopathological Examination of the Brain and Spinal Cord

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The tissues were fixed in 10% phosphate-buffered formalin, routinely processed and then embedded in paraffin. Tissue Sections (6 μm) were prepared using a microtome (HM-340E, Thermo Fisher Scientific, MA, USA), placed on a glass slide and stained with haematoxylin and eosin (H&E). H&E staining was performed following standard procedures. With 6 μm-thick paraffin sections, histopathological examination in the frontal, parietal and occipital lobes of the cerebrum, the cerebellum, brain stem (mid brain, pons and medulla oblongata) and spinal cord (cervical, thoracic and lumbar) was performed.
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9

Histological Analysis of Mouse Teeth and Periodontal Ligament

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Twenty-four-week-old male C57BL/6 mice (n = 5) were deeply anesthetized with diethyl ether and sodium pentobarbital (30 mg/kg) and were transcardially perfused through the left ventricle with heparin (10 U/ml) in saline, followed by fixation with 4% paraformaldehyde in phosphate-buffered saline (PBS). After perfusion, the mandible containing the teeth and PDL was removed from the skull. The specimens were immersed in the same fixative for 2 hours at 4 °C and were then decalcified in Kalkitox solution (Wako Pure Chemical Industries, Ltd., Osaka, Japan) for 5 days. The specimens were then embedded in paraffin. Paraffin blocks were cut into 6-μm-thick sections using a microtome (HM340E; Thermo Scientific, Waltham, MA, USA) in the axial and coronal planes. The sections were stained with haematoxylin and eosin and observed.
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10

Quantitative Scoring of Testicular Histology

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Each testis was extracted post-mortem from rats. To avoid histologic alterations caused by ischemia damage, tissue was obtained within 15 minutes after death. One testis per animal was preserved in Bouin’s solution and the other was frozen for immunohistochemistry. Tissue samples were then dehydrated using graduated ethanol alcohols (%70, 90, 96, and 100) and xylene before being embedded in paraffin to create tissue blocks. Slides were obtained by cutting sample blocks into 5 μm sections using a microtome (Thermo Scientific, HM340E). Slides were dyed with eosin and hematoxylin. Nikon® Eclipse was used to inspect them. As previously reported by Johnsen, sections were scored quantitatively to determine the extent of histological alterations associated with seminiferous tubule damage (18 (link)). A score of 1 to 10 was allocated to the testicular biopsies based on this scoring method (10: Perfect tubules, spermatogenesis; 1: No cells at all within the tubules) (19 (link)).
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