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7 protocols using prl cmv renilla luciferase reporter vector

1

PPARγ Transactivation Assay in H9c2 Cells

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H9c2 cells (0.5 × 105 cells per well) were plated in 24-well culture dishes and maintained overnight at 37 °C with 5% CO2. H9c2 cells were transiently co-transfected with PPARγ, ACO-PPRE and Renilla luciferase expression vector using Lipofectamine™ 2000 Reagent (Invitrogen, USA). After 6 h incubation with transfection mixtures, the culture medium was replaced by 10% FBS medium. Twenty-four hours after transfection, cells were treated with Honokiol (0, 2.5 μM, 5 μM) for one day. Finally, cells were harvested in a centrifuge tube and centrifuged at 1000 g for 5 minutes. The luciferase activity was measured in a luminometer using dual-luciferase reporter assay system (Promega) according to the manufacturer’s instructions. Transfection efficiency was normalized by Renilla luciferase reporter (pRL-CMV vector, Promega).
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2

Dual-Luciferase Assay of DNMT3B 3'UTR

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DNMT3B luciferase reporters containing DNMT3B wild-type 3′UTR (CUCUUCUUACUGGUGCUA) or mutant 3′UTR (CUCUUCUUACUCCUCCUA) were purchased from SWITCH Gear Genomics Company (Menlo Park, CA). MDA-MB-231 cells were co-transfected with the 50 ng luciferase reporter, 1 ng Renilla luciferase reporter (pRL-CMV vector, Promega, Madison, WI), or/and 100 nM mimic miR-29c by Lipofectamine 3000 (Invitrogen, Grand Island, NY), respectively. After transfection for 24 h, cells were lysed and centrifuged at 12000 rpm for 10 min. The supernatant was collected following centrifuging, and luciferase activities were measured using the Dual-Luciferase Assay System (Promega, Madison, WI). The activity of Renilla luciferase was normalized to that of firefly luciferase.
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3

Transfection and Luciferase Normalization

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Full-length, linear monomeric HBV of specific D-subgenotype was released from pJET1.2/blunt vector by digestion with 1U of SapI/µg at 37 °C for 12 hours, which was followed by gel purification using QIAquick gel extraction kit (Qiagen). Huh7 cells, seeded into 12-well plates at a concentration of 2 × 105 cells/well, were individually transfected with 1 µg/well of the HBV/D-monomers or pGL3-HBx constructs using Lipofectamine 2000 transfection reagent (Thermo Fisher Scientific) along with pRL-CMV Renilla Luciferase Reporter Vector (Promega), which served as transfection normalization control. Six hours post-transfection, culture medium was replaced with fresh Dulbecco’s modified Eagle’s medium (DMEM) (Hi-Media Laboratories Pvt. Ltd., Maharashtra, India) containing 10% fetal bovine serum (FBS) (Thermo Fisher Scientific). The values obtained from each experiment were normalized to Renilla luciferase levels. All experiments were performed in triplicates and repeated at least three times. The data was expressed in fold-change where the expression value of subgenotype-D1 was set at 1.0 and values of other D-subgenotypes were expressed relative to D1.
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4

Regulation of beta-catenin signaling

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DLD1 cells, stably expressing two different doxycycline-inducible shRNAs targeting CTNNB1 (CTNNB1-1 and CTNNB1-2) or a non-silencing scramble shRNA (Scrmbl), were treated for 4 days with DOX at 2 μg/ml or a solvent control. At second day during DOX treatment, cells were plated in 35-mm six-well plates. After 12—24h cells were then transfected with 0.5 μg of CTNNB1 reporter or TOPflash, 1 μg of pCDNA3 (Invitrogen) and 0.05 μg of PRL-CMV Renilla luciferase reporter vector (Promega) using Mirus TransIT-LT1 transfection reagent (Mirus Bio, Madison, WI) according to the manufacturer's protocol. Cells were harvested 45h later and luciferase activities were measured using a Dual-luciferase kit and GloMax-Multi Detection System from Promega.
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5

Evaluating Mutant HBV Genomes in Huh7 Cells

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To determine the effect of occult-associated mutations inside the ORF-S, ORF-X, or regulatory regions of HBV on its own life cycle or on the host cells, as compared to the wt-HBV genome, full-length wt or different mutant (mt)-HBV genomes were released from pJET1.2 vector by SapI digestion and these linear full-length HBV monomers were transfected in Huh7 cells41 (link). To evaluate the effects of mutations inside rt and rh regions of ORF-P, replication competent pTriEXMod/HBVD-WT and pTriEX-Mod/HBV-D-MT plasmids were used directly for transfection assay. Huh7 cells were seeded into 6 well plates at a concentration of 2 × 105 cells/well in DMEM (HIMEDIA) with 10% FBS (Gibco). Sixteen hours post seeding, cells were transiently transfected separately with 2 µg of purified SapI digested, full-length linear monomeric HBV (wt and appropriate mt genome) or pTriEXMod/HBV-D plasmids (wt/mt) along with pRL-CMV Renilla Luciferase Reporter Vector (Promega), which served as transfection normalization control, using Lipofectamine 2000 transfection reagent (Invitrogen).
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6

Investigating HBX Regulation of C9 Promoter

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To study C9 promoter activity in presence of HBX, Huh7 cells were co-transfected with pGL3-C9-Prom, pcDNA3.1/myc-His(B)-HBx and pRL-CMV Renilla Luciferase Reporter vector (Promega, WI, USA). Seventy-two hours post transfection, the cells were harvested in Passive Lysis Buffer (Promega) and the firefly and Renilla luciferase activities were measured sequentially using the Dual-Luciferase Reporter Assay kit (DLR) (Promega) in a luminometer (Promega). The activity of Renilla luciferase was used to normalize the firefly luciferase enzyme activity.
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7

Transient Transfection and NF-κB Luciferase Assay

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Transient transfections were performed using Fugene 6 (Roche Applied Science, Indianapolis, IN), following the manufacturer’s instructions. Cells were transfected with the nuclear factor-kappa B (NF-κB) cis-reporter construct, which contains 5 repeats of the transcription recognition sequence (TGGGGACTTTCCGC) linked to a basic promoter element (TATA box) and the firefly luciferase gene (Stratagene, La Jolla, CA). The pRL-CMV Renilla luciferase reporter vector (Promega, Madison, WI) was co-transfected in each experiment and used as an internal control promoter in order to normalize for transfection efficiency. A total of 1 μg of DNA for each well on a 6-well plate was used for both firefly and Renilla luciferase reporter constructs at a firefly:Renilla ratio of 20∶1. Cells were lysed using passive lysis buffer (Promega, Madison, WI) and stored at −80°C. Firefly and Renilla luminescence were measured using the Dual-Luciferase Reporter Assay System (Promega) on a FLUOstar microplate luminometer (BMG Labtech, Ortenberg, Germany).
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