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22 protocols using eclipse xdb

1

Analytical Characterization of Compounds

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Extraction was performed on an ultrasonicator (KQ-800, Kunshan Ultrasonic Instruments Co., Ltd., Kunshan, China). High performance liquid chromatography (HPLC) was performed on an Agilent 1200 HPLC system (Agilent Technologies, Santa Clara, CA, USA) with a C18 column (ZORBAX Eclipse XDB, 150 mm × 4.6 mm, 5 μm, 100 Å-spherical silica) and a semipreparation C18 column (ZORBAX Eclipse XDB, 250 mm × 9.4 mm, 5 μm, 100 Å-spherical silica). The molecular weight was determined by the Agilent electrospray ionization time of flight mass spectrometry (ESI-TOF-MS) 6230. A nuclear magnetic resonance (NMR) assay was performed on Bruker AM-400 spectrometers (Bruker Daltonics Inc., Billerica, MA, USA). Fibrinolytic activity was detected by a microplate reader (SH-1000, CORONA, Ibarakiken, Japan).
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2

HPLC-UV Analysis of Phytochemical Standards

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The standards of oxymatrine, sophoridine, matrine, trifolirhizin, maackiain, kushenol I, kurarinone, and sophoraflavone G (purity ≥ 98.0%) were purchased from Shanghai Tauto Biotech Company (Shanghai, China). Their batch numbers were 16837–52–8, 6882–68–4, 519–02–8, 6807–83–6, 19908–48–6, 99119–69–4, 34981–26–5, and 97938–30–2, respectively.
The sample extracts were also used for alkaloid and flavonoid quantitative analyses. An Agilent HPLC-UV 1260 series system (Agilent, USA) equipped with a quaternary pump, automatic sampler, column compartment. A VWD was also employed. A 4.6 mm × 250 mm C18 reversed-phase column (with an inner diameter of 5 µm; Eclipse XDB, Agilent, USA) was used for separation, and the sample injection volume was set as 10 µL. The conditions for alkaloids were set as follows: column temperature of 30 °C, a flow rate of 1.0 mL/min, and a wavelength of 220 nm31 . The gradient was composed of 80% acetonitrile (A), 10% ethanol (B), and 10% water (C). The conditions for flavonoids were set as follows: column temperature of 35 °C, a flow rate of 1.0 mL/min, and a wavelength of 295 nm 32 . The gradient was composed of acetonitrile (A) and water (B), and the linear gradient was set as follows: 0–25 min for 19%–50% A, 25–30 min for 50%–70% A, 30–40 min for 70% A, and 40–50 min for 70%–40% A.
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3

HPLC Analysis of Pharmaceutical Compounds

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HPLC analysis was performed using Agilent Eclipse XDB (250 mm×4.6 mm, 5 μm) C18 column as stationary phase. The mobile phase consisted of methanol: Sodium di-hydrogen phosphate (pH 3) applied in stepwise gradient elution with respective ratios of (50: 50 v/v, which turned to 80: 20 v/v) for mixture (1). Table 1 shows the stepwise gradient program that was used. For mixture (2), the same mobile phase was used in isocratic elution in the ratio (80: 20, v/v) respectively. The flow rate of the mobile phase was set to 1 mL/min. The pH of the mobile phases was adjusted to 3 using ortho-phosphoric acid. Analyses were carried out at ambient temperature and UV detection at 220 and 240 nm for mixture (1) and 220 and 248 nm for mixture (2). Each sample was analysed in three replicates with a 10 µL injection volume.

Gradient programme of the HPLC method for determination of MUP, FLU, Pseud-D, and FIC

Time (min)Buffer (%)Methanol (%)Flow rate(mL/min)
0–7 min50%50%1mL/min
8–15 min20%80%1mL/min
16–22 min50%50%1mL/min
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4

Detailed HPLC Analysis of Bactoprenyl Phosphates

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All HPLC was performed on an Agilent 1100 HPLC system equipped with diode array and fluorescence detectors. HPLC analysis was performed with a flow rate of 1 mL/min unless stated otherwise on either a C8 or C18 Agilent Eclipse XDB, 5μm, 4.6 × 150 mm column. PglF, WcfS, WcfR, WcfP, WcfN, and 2CNA bactoprenyl phosphates were prepared as described previously.19 (link), 28 (link) Total protein concentration in membrane fractions were measured using a Bradford assay with BSA as a standard.44 (link) WcfO, WcfP and WcfN reactions were left unquenched for more than an hour, unless stated otherwise. All reactions were performed at room temperature 22-24 °C. Concentrations of isoprenoid were measured spectroscopically using the 2-nitrileaniline (2CNA) extinction coefficient ε340=2700 M−1 cm−1. Uridine diphosphate-linked sugar concentrations were based on the extinction coefficient of uridine (ε260=10,000 M−1 cm−1). Each reaction and HPLC analysis was performed three times with each repeat on separate days. Results were similar for multiple batches of prepared proteins.
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5

HPLC-UV Determination of Tripeptide-3

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HPLC-UV chromatography system (Shimazu LC-20AD, Kyoto, Japan) was employed for determination of Tripeptide-3. A reversed-phase C-18 column, (Eclipse XDB, 4.6 mm × 250 mm, 5 µm, Agilent, CA, USA) with a gradient-elution programmed analysis employed the mobile phase consisted of 0.1% trifluoroacetic acid and acetonitrile (ACN) as polar and non-polar mobile phases, respectively. The step gradient elution at a flow rate of 1 mL/min was performed by increasing the ACN from 8% to 16% for 21 min., then to 50% in 4 min, holding at this composition for 3 min, before decreasing ACN to 8% and holding at this composition, before a next injection that led to a total analytical time of 35 min per sample. The column temperature was maintained at 30 °C. A sample solution of 50 µL was injected into the column. The detection was carried out at 215 nm with a UV detector. The HPLC method validation was performed; the assay was linear (coefficient of determination, R2 > 0.999) in the Tripeptide-3 concentration range of 0.312–50.0 µg/mL with the lowest quantitation concentration of 312 ng/mL. An accuracy (% recovery) in the range of 90–106% was obtained with the intra- and inter-day precision (RSD) of less than 2.18%. The stability of the Tripeptide-3 in various pH of the colloidal dispersion and 24 h in autosampler was also determined.
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6

HPLC Analysis of Organic Compounds

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Agilent HPLC 1260 series system (Agilent, USA) equipped with a quaternary pump, an autosampler, a column compartment, and a VWD was used for HPLC analysis. A C18 reversed phase column (250 mm × 4.6 mm, i.d. 5 µm, Eclipse XDB; Agilent, USA) was used for separation, and the sample injection volume was set as 10 µL. The column temperature was kept at 25 °C, the flow rate at 1.0 mL/min, and wavelength at 203 nm. The Gradient was composed of water (A) and acetonitrile (B), and the linear gradient was set as follows: 0–12 min for 19% B and 12–60 min for 19% B to 36% B.
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7

HPLC Analysis of Regorafenib and IS

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The HPLC system included chromatographic pumps (LC-20AT; Shimadzu Co., Kyoto, Japan), an autosampler (SIL-20AC; Shimadzu Co., Kyoto, Japan) and a UV–Vis detector (SPDM20A; Shimadzu Co., Kyoto, Japan). A Waters Acquity C18 column (50 × 2.1 mm, particle size 1.7 μm, Eclipse XDB, Agilent, Palo Alto, CA, USA) was used for sample analysis. The mobile phase consisted of potassium dihydrogen phosphate (10 mM, pH = 3) and acetonitrile (55:45, v/v). The flow rate was set to 0.2 mL/min, and the injection volume was 5 μL. The temperature in the autosampler was set to 40 °C. The UV–Vis detector scanned from 190 to 300 nm, and the chromatographic profiles were monitored at 265 nm for regorafenib and diethylstilbestrol (internal standard (IS)).
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8

Fluorescent Protein Labeling Techniques

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Commercial reagents and solvents were obtained from Sigma-Aldrich or Fisher Scientific unless otherwise noted. BG-NH2 and BC-NH2 were acquired from New England Biolabs (NEB), and HaloTag amine (O2) ligand was purchased from Promega. ATTO 674N NHS ester, Alexa Fluor 594 NHS ester, and Cy2 bis-NHS ester were obtained from Sigma-Aldrich, Life Technologies, and GE Healthcare Life Sciences, respectively. All solvents were purchased in septum-sealed bottles stored under an inert atmosphere. Reactions were monitored by LC/MS (Phenomenex Kinetex 2.1 mm × 30 mm 2.6 μm C18 100 Å column; 5 μL injection; 5–98% MeCN/H2O, linear gradient, with constant 0.1% v/v formic acid additive; 6 min run; 0.5 mL/min flow; ESI; positive ion mode). Reaction products were purified by preparative reverse phase HPLC (Phenomenex Gemini–NX 30 mm × 150 mm 5 μm C18 column). Analytical HPLC analysis was performed with an Agilent Eclipse XDB 4.6 mm × 150 mm 5 μm C18 column under the indicated conditions.
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9

HPLC analysis with Eclipse XDB C18 column

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Waters arc HPLC consisted of quaternary pump and PDA detector model 2998. The stationary phase was Agilent Eclipse XDB (250 mm×4.6 mm, 5 μm) C18 column (United States). pH-meter; Digital pH/MV/TEMP/ATC meter, Model- 5005, Jenco Instruments (California, USA).
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10

Quantitative Ginsenoside Analysis in Ginseng

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The standard ginsenosides, namely, Rg1, Re, Rb1, Rb2, Rc, and Rd, were purchased from Shanghai Tauto Biotech Company (Shanghai, China). The standard solutions were dissolved in methanol (Fair Lawn, NJ, USA) for further experiments. Ten samples of P. ginseng roots (4-year-old) from each plot were pooled and considered one sample. P. ginseng extract preparation was performed according to the description of Dong et al. [22 (link)]. Ginsenoside contents were determined through high-performance liquid chromatography (Agilent 1260, USA) using a system equipped with a binary pump, an online degasser, a column compartment, and an auto plate sampler. The reA C18 reversed phase column (250 mm × 4.6 mm, i.d. 5 µm; Eclipse XDB, Agilent, USA) was used for separation. The column temperature was kept at 25 °C, and the flow rate and wavelength were 1.0 ml min−1 and 203 nm, respectively. The gradient was composed of water and acetonitrile. The linear gradient was set as follows: 0–12 min for 19% acetonitrile and 12–60 min for 19–40% acetonitrile.
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