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62 protocols using dfc300fx camera

1

Embryonic Development Evaluation Across Stages

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The phenotypes of embryos were scored when they had reached stage 45 at circa five days from the beginning of the treatment. We evaluated the survival, malformations, length, and cardiac frequency of the embryos as in Carotenuto et al. [43 (link)]. The embryos survival and phenotype were checked daily. All samples were photographed with a Leica MZ16F UV stereomicroscope, equipped with a Leica DFC 300Fx camera and IM50 Image Manager Software.
For histology, the embryos were performed with standard histological protocols for optical microscopy as in Carotenuto et al. [35 (link)]. Briefly, after euthanasia with 2 mg/L of tricaine (MS-222, Sigma–Aldrich, Denmark) the samples were fixed in Bouin solution for 24 h, dehydrated, and mixed with paraffin. Hematoxylin–eosin staining was performed on Sections of 5 μm [23 (link)]. At least 10 slides of 10 different embryos from each treatment were examined, and the morphology of the eyes, gut, and gills were investigated. The images were acquired with a Zeiss Axiocam Microscope Camera Applied to a Zeiss Axioscope microscope (Zeiss, Jena, Germany).
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2

Apical Hook Development Visualization

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Dark-grown seedlings were collected during the formation, maintenance and opening phases of apical hook development. Apical hooks in maintenance phase were exposed to light for indicated time points. Fixation step, histochemical GUS staining, clearing and rehydration steps were performed as indicated 33 . The rehydrated seedlings were mounted in chloralhydrate for analysis by light microscopy (Leica DM 5500) equipped with a DFC 300 FX camera (Leica). The intensity of the staining was quantified as described in 33 in a region of interest (ROI) kept constant or depicted along a line. Number of analysed seedlings per line and condition are given in the figure legends; experiments were repeated at least 3 times and a representative experiment is shown.
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3

Wasp Infestation Assay for Fly Larvae

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For wasp infestation experiments, 30 synchronized second instar (L2) larvae were placed on a pea‐sized mound of fly food within a custom‐built wasp trap in the presence of three female L. boulardi (strain NS1c, described in Ref. 58) for 2 h. Quantification of fly survival was performed as follows. Parasitized larvae were kept at room temperature and scored daily for flies or wasps emergence. The number of eclosed flies and wasps was subtracted of the initial number of exposed larvae and set as dead larvae/pupae. Pictures of melanised eggs were taken with a Leica DFC300FX camera and Leica Application Suite.
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4

Immunodetection of Glial Markers in Spinal Slices

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Spinal slices were used for the detection and quantification of GFAP or Iba-1 immunofluorescence. After preincubation for 1 h with Tris-buffered saline with 0.1% Triton X-100 (pH 7.5), sections were sequentially incubated overnight at 4 °C with the following polyclonal antibodies: (i) anti-Iba-1 (Wako Chemicals, Richmond, VI, USA) used at 1:500; or (ii) anti-GFAP (Dako Cytomation, Glostrup, Denmark) used at 1:200, followed by washing in Tris-buffered saline and a new incubation (at 37 °C for 2 h) with an anti-rabbit secondary antibody conjugated with Alexa 488 (Invitrogen, Carlsbad, CA, USA). A DMRB microscope and a DFC300Fx camera (Leica, Wetzlar, Germany) were used for slide observation and photography. The mean density of immunolabelling was measured in the selected areas. Again, all data were transformed to the percentage over the mean obtained in the wild-type group for each parameter.
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5

Immunofluorescence Staining Protocol

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For immunofluorescence see procedure described Perez-Asensio et al. (2013) (link). The list and dilution of primary antibodies was: pSTAT3ser727 (1:500), pERK1/2 (1:500), BIII-Tubulin (1:1000), DCX (1:1000), Nestin (1:200), Ki67 (Leica Microsystems, Wetzlar, Germany 1:1000), BrdU (AbCam, 1:400), Olig2 (Millipore, 1:400), GFAP (DAKO, 1:2000). Staining on cell cultures was visualized with a Leica CTR400-DMI400B inverted microscope or Leica DM5500Q confocal microscope. Photographs were taken by a DFC300FX camera from Leica. Quantification was carried out using Leica Application Suite (LAS-Leica) or ImageJ (NIH) software. The number of positive cells for each experimental assay was expressed as percentage of the total number, and/or referred as percentage of the control.
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6

Wound Healing Assay Using Ibidi Culture-Inserts

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Wound-healing assays were performed by creating identical wound areas into the cell monolayer using Ibidi culture-inserts (Ibidi GmbH, Cat. no. 80209, Munich, Germany). U2OS cells were seeded in complete culture medium at a density of 3 × 104 cells on each side of the Ibidi culture-insert, into a 24-well plate. After attachment, cells were treated for 24 h inhibitors (or vehicle in the controls); then the culture-insert was detached in order to form a cell-free gap into the cell monolayer. Each well was rinsed once with phosphate-buffered saline (PBS) to remove cell debris and immediately refilled with fresh medium, with new addition of the inhibitors (samples with “maintained” treatment) or without (sample with “removed” treatment). Cells were allowed to migrate for further 48 h. The wound images were captured at time zero (t = 0 h), t = 24 h, and t = 48 h using a Leica DMI4000 automated inverted microscope equipped with a Leica DFC300 FX camera.
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7

Quantifying Motor Neuron Density

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Slices were used for Nissl staining using Cresyl Violet, as previously described (Alvarez et al., 2008 (link)). A Leica DMRB microscope (Leica, Wetzlar, Germany) and a DFC300FX camera (Leica) were used for the observation and photography of the slides, respectively. For counting the number of Nissl-stained large motor neurons in the anterior horn, high-resolution photomicrographs were taken with the 20× objective under the same conditions of light, brightness and contrast. Four images coming from at least three sections per animal were analysed. The final value is the mean for all animals included in each experimental group.
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8

Melanization Kinetics in Drosophila Injury

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‘Clean’ injury referred to an injury performed with a needle that has been previously sterilized. A low level of bacterial contamination is still possible since the surface of the insect was not sterilized. For adults, two different intensities of physical wounding were used (adapted from [13] (link)). In strong wounding the thorax of the fly was completely penetrated using a sterile needle of ∼50 µm diameter. For survival to clean injury and for imaging of the melanization reaction upon pricking, the thorax of the animal was pricked (as described in infection experiments) using a sterile needle (diameter: ∼5 µm). Pictures were taken three hours post-pricking. Third instar larvae were pricked dorsally using a sterile needle (diameter: ∼5 µm). Pictures of melanized larvae were taken 30 minutes post-injury. For the melanization time-course of larvae (Fig. 3B), the presence of a blackening spot was recorded after pricking, every 5 minutes until 30 minutes. Pictures were captured with a Leica DFC300FX camera and Leica Application Suite.
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9

Agar-based 3D cell culture assay

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U2OS cells were plated at 50% confluence, allowed to adhere to the plate for 16 h, and then treated with inhibitors or vehicle for 24 h. After treatment, cells were washed, detached, counted, and seeded at 1000 cells/well in 200 μL of culture medium, in a 96-well plate with round bottom wells precoated with 50 μL of 1% agar in culture medium [17 (link)]. Images were taken from each well 24 h and 96 h later, by means of a Leica DMI4000 automated inverted microscope equipped with a Leica DFC300 FX camera.
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10

Wound Healing Assays with Ibidi Culture-Inserts

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Wound-healing assays were performed by creating identical wound areas into the cell monolayer using Ibidi culture-inserts (Ibidi GmbH, Cat. no. 80209). Cells were seeded in triplicate in complete culture medium on each side of the Ibidi culture-insert, into a 24-well plate, at proper cell densities (1.5 × 106 SK-N-BE cells/mL and 5.5 × 104 U2OS cells/mL). After 24 h, cells reached confluence, and the culture-inserts were removed in order to form a cell-free gap into the cell monolayer. Each well was washed once with PBS to remove cell debris and immediately refilled with fresh D-MEM medium supplemented with 5% (v/v) FBS and 2mM L-glutamine. The wound images were captured at this time (t = 0) and at the indicated time points (24–48 h for SK-N-BE, 2–4–8 h for U2OS) using a Leica DMI4000 automated inverted microscope equipped with a Leica DFC300 FX camera (2.5× objective, magnification-changer 1.6). Images of in vitro scratch wound healing assays were analyzed with a plugin of ImageJ software (1.52t version) adapted from [28 (link)] and relative cell migration of each cell line was measured.
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