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Sybr green real time pcr kit

Manufactured by Thermo Fisher Scientific
Sourced in United States, France

The SYBR Green Real-Time PCR Kit is a laboratory equipment product designed to perform quantitative real-time polymerase chain reaction (qRT-PCR) analysis. It contains the necessary reagents, including SYBR Green dye, to detect and quantify target DNA sequences in a sample.

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48 protocols using sybr green real time pcr kit

1

Multiplex Real-Time PCR Assays for Animal Detection

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Two multiplex, quantitative, real-time PCR assays targeting all animals were developed using a two-panel set of primers. The specificity of each primer was validated by real time PCR using DNA from the afore-mentioned (bovine, cat, pig, monkey, chicken, human, dog, and rat) vertebrate species as positive controls.
The DNA samples from each of those animals were used to develop and optimize assay conditions of two multiplex PCR assays with SYBR Green real-time PCR kit (Thermo Scientific, CA, USA) using different sets of primers. Assay conditions were optimized to obtain a specific fluorescence. All channels were scanned simultaneously for increases in fluorescence following the extension of each cycle using Swift Spectrum 48 fluorescence quantitative PCR detection systems (SPT-RT-48, Esco Health Care Pvt Ltd, Singapore). Each sample was tested for panel-one and panel-two animals simultaneously.
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2

Hepatic Stellate Cell Activation Assay

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HSC-T6 was purchased from Beijing Friendship Hospital (Beijing, China). TGF-β1, LY-364947 [4-[3-(2-pyridinyl)-1H-pyrazol-4-yl]-quinoline HTS 466284 transforming growth factor β Type I receptor kinase inhibitor, molecular formula: C17H12N4, weight: 272.30, and purity: ≥95% (HPLC)], DMSO, and MTT were purchased from Sigma (St. Louis, USA). AST [molecular weight: 248.36386; purity: ≥98%] was purchased from Pure-One Bio Technology (Shanghai, China). Malotilate was purchased from Yabang Epson Pharmaceutical (Jiangsu, China). Kits of ALT, AST, TBil, Alb, MDA, GSH, SOD, COL-I, COL-III, α-SMA, MMP-2, TIMP-2, hydroxyproline, H&E staining, Masson's trichrome staining, Sirius red staining, and Annexin V-FITC/PI double staining were purchased from Jiancheng Bioengineering Institute (Nanjing, China). Antibodies against α-SMA, TGF-β1, TβR-I, Smad 2, p-Smad 2 (S465/467), Smad 3, p-Smad 3 (S423/425), Smad 7, and β-actin were purchased from Cell Signaling Technology (MA, USA). HRP-labeled secondary antibodies were purchased from ZSGB-BIO (Beijing, China). RevertAid™ First Strand cDNA Synthesis Kit and SYBR Green Real-Time PCR Kit were purchased from Thermo Fisher (MA, USA).
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3

Optic Nerve Immunohistochemistry and qPCR Analysis

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For the conventional immunohistochemistry, the mice of indicated conditions were perfused with PBS/50 μg/mL heparin followed by PBS/1% PFA/10% sucrose/50 μg/mL heparin. The optic nerves were dissected out and post-fixed in PBS/0.5% PFA at room temperature for 2 h. The tissues were cryopreserved in PBS/30% sucrose at 4 °C overnight, then processed for 5-μm cryosectioning. The sections were immunostained with the indicated primary antibodies and corresponding Alexa Fluor-conjugated secondary antibodies, and then imaged by the fluorescence microscopy.
For the qPCR analysis of gene expression, the optic nerves were acutely dissected from the mice of indicated conditions. Total RNAs of the nerve tissues were extracted by the RNeasy Mini Kit (Qiagen), and then reverse-transcribed and analyzed by the SYBR Green Real-Time PCR Kit (Thermo Fisher Scientific).
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4

Quantifying METTL7A Expression in Melanoma

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In order to verify the transfection of efficiency and the expression of METTL7A in PIG1, A2058, and SKMEL28, RT-qPCR was used. TRIzol reagent (Thermo Fisher Scientific, Inc., Waltham, MA, USA) was used to extract total RNA from the 6-well plate, for the detection of METTL7A mRNA expression, reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was used. In this study, qPCR was conducted on a CFX96 Touch Real-Time PCR system with a SYBR Green Real-Time PCR kit (Thermo Fisher Scientific, Inc.). The primers used for real-time PCR were METTL7A-F: 5′- GTGCAACCTGACCAGAGAGA -3′and METTL7A-R: 5′- GTGCTGCAGCTTCAGCTTAG -3′; GAPDH-F: 5′-CTGGGCTACACTGAGCACC-3′and GAPDH-R: 5′-AAGTGGTCGTTGAGGGCAATG-3′.In this study, qPCR was performed under the following conditions: 95 °C for 30s, followed by 40 cycles of 95 °C for 5 s, 55 °C for 30 s and 72 °C for 30 s. and the 2−ΔΔCq method was used to calculate changes in gene expression within a target gene.
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5

Quantifying CircRNA and miRNA Expression

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Total RNA was extracted from pooled normal and tumor tissue samples using TRIzol (Thermo Fisher Scientific, Inc.), and 1 µg of total RNA was reverse transcribed into first-strand cDNA using a PrimeScript RT Reagent kit (Takara Bio, Inc., Otsu, Japan), according to the manufacturer’s protocols. qPCR was performed with a SYBR-Green real-time PCR kit (Thermo Fisher Scientific, Inc.) using the ABI StepOnePlus Real-Time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). CircRNAs were analyzed with 18s rRNA as the internal standard and miRNA was analyzed with U6 as the internal standard. The reactions were prepared as follows: 7.5 µl SYBR Premixm Ex Taq II, 0.25 µl ROX Reference Dye II, 0.125 µl forward primer, 0.125 µl reverse primer, 5 µl RNase-free water, and 2 µl cDNA. The thermocycling conditions were: one step at 95°C for 30 sec, followed by 40 cycles of 95°C for 5 sec and 60°C for 30 sec, and a final step of 95°C for 15 sec, 60°C for 15 sec and 95°C for 15 sec. Primer sequences are listed in Table I; expression levels were quantified via the 2−ΔΔCq method (28 (link)).
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6

Quantitative Analysis of CD44 Expression

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Total RNA was isolated using Trizol reagent (Thermo Fisher Scientific, Inc.) based on the manufacturer's protocol. cDNA was synthesized from mRNA using a FastKing RT reagent kit (Tiangen, Inc.). The RT reaction was performed at 42°C for 15 min and 95°C for 3 min. QPCR was performed with a SYBR Green Real Time PCR kit (Thermo Fisher Scientific, Inc.) on CFX96 Touch Real Time PCR System (BioRad Laboratories, Inc.) under the following conditions: 95°C for 1 min, then 40 cycles of 95°C for 5 sec and 60°C for 15 sec. The primers used for qPCR were as follows: Human CD44, forward 5′-TGG AGA AAA ATG GTC GCT ACA G-3′, reverse 5′-GGG CAA GGT GCT ATT GAA AGC-3′; human GAPDH, forward 5′-CTG GGC TAC ACT GAG CAC C-3′, reverse 5′-AAG TGG TCG TTG AGG GCA ATG-3′. The formula 2−ΔΔCq was employed to analyze the fold change of mRNA expression levels (17 (link)).
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7

Vemurafenib Modulates Gene Expression in Breast Cancer Cells

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Cells were seeded at the density described above and incubated for 24 hours before the addition of vemurafenib. The compounds were added to the final concentrations of 0, 20, 40, and 60 μM. After 48 hours of treatment, Cell pellets were collected for experiments. Total RNA was isolated from MCF-7, SK-BR-3 and MDA-MB-231 by using Trizol reagent (Thermo Fisher Scientific, Inc.) according to the manufacturer’s instructions. Total RNA (1 μg) from each group of treated cells was converted to cDNA using a FastKing RT reagent kit (Tiangen, Inc.). The RT reaction was performed at 42°C for 15 min and 95°C for 3 min. qPCR was performed with a SYBR Green Real Time PCR kit (Thermo Fisher Scientific, Inc.) on CFX96 Touch Real Time PCR System (BioRad Laboratories, Inc.) under the following conditions: 95°C for 1 min, then 40 cycles of 95°C for 5 sec and 60°C for 15 sec. The gene expression level was calculated as 2(−△△Ct) method, and the △Ct means the Ct of target gene minus the Ct of reference gene. The primers used for real-time PCR were BCL2A1 (forward) 5’-AAATTGCCCCGGATGTGGAT-3’ and (reverse) 5’-ACAAAGCCATTTTCCCAGCCT-3’; GAPDH (forward) 5’-CTGGGCTACACTGAGCACC-3’ and (reverse) 5’-AAGTGGTCGTTGAGGGCAATG-3’.
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8

Isolation and Characterization of MDSCs

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PMN-MDSCs and M-MDSCs in the mouse spleens under the indicated conditions were FACS-sorted on the BD FACSAria. The cells were in vitro cultured in RPMI-1640 (Gibco) supplemented with 10% HI-FBS, 100 U/mL penicillin and 100 μg/mL streptomycin, and then treated with 10 μM NE or 20 μM propranolol (Selleck Chemicals) for 1 h. Total RNAs of the cells were extracted by the RNeasy Mini Kit and analyzed by the SYBR Green Real-Time PCR Kit (Thermo Fisher Scientific). Gapdh mRNA levels were utilized as the internal control.
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9

qPCR Quantification of PAR4 Expression

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RNA extraction, first-strand cDNA synthesis and the design of primers were as described previously (7 (link)). The primers used for qPCR were as follows: GAPDH (107 bp product; internal control), 5′-TGATGACATCAAGAAGGTGGTGAAG-3′ (forward) and 5′-TCCTTGGAGGCCATGTGGGCCAT-3′ (reverse); PAR4 (147 bp product), 5′-CCTTCATCTACTACTACTACGTGTCG-3′ (forward) and 5′-ACTGGAGCAAAGAGGAGTGG-3′ (reverse). qPCR for PAR4 and GAPDH were performed using an SYBR Green Real-Time PCR kit (Thermo Fisher Scientific, Inc., Waltham, MA, USA) with the conditions as follows: Initial denaturation at 95°C for 1 min, followed by 40 cycles of 95°C for 15 sec and 60°C for 1 min. Each sample was run three times. Products were analyzed using a continuous fluorescence detector with Opticon Monitor 3.0 software (Bio-Rad Laboratories, Inc., Hercules, CA, USA). No-template controls (no cDNA in PCR) were included to detect non-specific or genomic amplification and primer dimerization. Relative quantitative evaluation of PAR4 was performed using the E-method (6 (link),7 (link)) and expressed as a ratio of the transcript of PAR4 to GAPDH in the different cell lines. The identities of qPCR products were confirmed by DNA sequencing.
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10

Quantification of circRNA Expression

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In accordance with the recommendations provided by the manufacturer, Trizol (Thermo Fisher Scientific, Inc.) was utilized to isolate total RNA from LPS-treated and Sham group DRG specimens, followed by reverse transcription of 1 μg of total RNA into first‐strand cDNA utilizing a PrimeScript RT Reagent kit (Takara Bio, Inc., Otsu, Japan). Subsequently, the SYBR‐Green real‐time PCR kit (Thermo Fisher Scientific, Inc.) was utilized to conduct qPCR with the help of the ABI StepOnePlus Real-Time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). The internal control for the analysis of circulating RNAs was chosen as GAPDH. In order to prepare the reactions, the following conditions were utilized: 2 μl cDNA, 5 μl RNase-free water, 0.125 μl reverse primer, 0.125 μl forward primer, 0.25 μl ROX Reference dye II, and 7.5 μl SYBR Premixm Ex Taq II. The following were the thermocycling parameters: 30 seconds for one step at 95°C, accompanied by 40 cycles of 95°C for 5 seconds and 60°C for 30 seconds, and the last step at 95°C for 15 seconds, 60°C for 15 seconds, and followed by 95°C for 15 seconds. In this analysis, the 2−ΔΔcq method was adopted to determine the circRNAs' relative expression level [10 (link)]. Table 1 provides a list of the primer sequences.
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