The largest database of trusted experimental protocols

121 protocols using ab6672

1

Cytometric Analysis of c-Kit, CD90, IL-6, and IL-6Rα

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometry was used to evaluate the co-segregation of c-Kit and CD90- with IL-6 or IL-6Rα. When examining IL-6, cells underwent fixation and membrane permeabilization. Cells were labelled with antibodies directed against c-Kit (550412, BD Pharmingen), CD90 (555596, BD Pharmingen) and IL-6 (ab6672, Abcam) or IL-6Rα (352805, BioLegend). For immunohistochemistry, cells were sorted using magnetic separation (11033 Dynabeads, Thermo Scientific) prior to fixation, permeabilization and staining with DAPI and IL-6 (ab6672, Abcam).
+ Open protocol
+ Expand
2

Intracisternal Administration of CSF and Drugs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The intracisternal (i.c.) transplantation of CSF and drug administration into the medulla segment were conducted as previously described [14 (link), 15 (link)]. In brief, we utilized a custom-made syringe with a 45° angled, length-limited (4.0 mm) needle. During CSF transplantation, 15 μl of CSF from either sham or CCI-ION model rats was injected on each occasion, with a total of four injections. To neutralize IL-6 in the CCI-ION CSF prior to injection, rabbit anti-IL-6 antibody (abcam, ab6672, 0.05 μg/μL) was mixed with the CSF and incubated at 37 °C for 1 h. As a control, rabbit isotype IgG was used. The applied drugs included rabbit isotype IgG (CST, 3900, 0.25 μg/μL), anti-IL-6 antibody (abcam, ab6672, 0.1 μg/μL and 0.25 μg/μL), and IL-6 protein (1.0 μg and 5.0 μg), with each injection volume adjusted to 5.0 μL.
For CSF collection, rats were anesthetized with pentobarbital sodium (50 mg/kg i.p.). A skin incision was made above the epencephalon to expose the foramen magnum. CSF were carefully drawn out using an insulin needle, appearing as a yellowish transparent liquid. Collected CSF samples were immediately flash-frozen with dry ice and subsequently stored at − 80 °C until required for analysis or application.
+ Open protocol
+ Expand
3

Nuclear Protein Extraction from Rat Sciatic Nerve

Check if the same lab product or an alternative is used in the 5 most similar protocols
A nuclear extraction kit (Ab110168, Abcam, Cambridge, MA, USA) was used for the preparation of nuclear extracts from sciatic nerve tissues. For Western blotting, frozen rat sciatic nerve tissues were homogenized and the lysates were prepared in ice-cold lysis buffer. Nuclear extracts or total protein were collected and normalized for equal amounts of total protein measured by the bicinchoninic acid (BCA) method. Seventy micrograms of protein from each sample was separated on a sodium dodecyl sulfate polyacrylamide gel and transferred to PVDF membranes. The membranes were blocked with 5% nonfat milk and incubated overnight with primary anti-NF-κB antibody (1:1000; sc-109, Santa Cruz, CA, USA), anti-IL-6 antibody (1:1000; ab6672, Abcam, Cambridge, MA, USA), anti-TNF-α antibody (1:1000; AB1837P; Millipore, Billerica, MA, USA), and anti-β-actin (1:5000, Sigma, St. Louis, MO, USA) at 4 °C, followed by incubation with the suitable HRP-conjugated secondary antibody for 4 h. β-actin protein was immunodetected as the internal standard.
+ Open protocol
+ Expand
4

Protein Expression Analysis of Rat Heart

Check if the same lab product or an alternative is used in the 5 most similar protocols
The rat heart total proteins (50 µg) were separated on a 12% SDS-polyacrylamide gel, and transferred onto polyvinylidene difluoride membranes (Bio-Rad, Hercules, CA). The membranes were blocked with 5% nonfat milk for 30 minutes at room temperature and then incubated with anti-MMP-2 (ab80737, Abcam, Cambridge, MA), HIF-1α (MAB1536, R&D Systems, Shanghai, China), NF-kB (ab16502, Abcam), IL-6 (ab6672, Abcam), or β-actin (ab8227, Abcam) antibodies overnight at 4°C. After wash, the membranes were incubated with horseradish peroxidase-conjugated secondary antibody (Jackson ImmunoResearch Laboratory, West Grove, PA, USA) for 1 hour at room temperature. The blots were then visualized by using the enhanced chemiluminescence kit (Pierce, Rockford, IL, USA). Densitometry was performed with a Hewlett-Packard scanner and NIH Image software (Image J).
+ Open protocol
+ Expand
5

Western Blot Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
In brief, total protein was isolated with RIPA lysis buffer at 14 000 g for 15 min at 4°C. The proteins were separated using 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were blocked with 5% dry nonfat milk in PBST for 1 h and incubated with primary antibodies against TNF-α (cat no. 3707; Cell Signaling Technology, Inc.; dilution, 1: 1000), IL-1β (cat no. 12703; Cell Signaling Technology, Inc.; dilution, 1: 1,000), IL-6 (ab6672; Abcam, USA; dilution, 1: 1000), netrin-1 (ab126729; Abcam, USA; dilution, 1: 1000), UNC5B (ab104871; Abcam, USA; dilution, 1: 500), and GAPDH (cat no. 5174; Cell Signaling Technology, Inc.; dilution, 1: 1000) overnight at 4°C and then incubated with horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (Santa Cruz Biotechnology, Santa Cruz, CA) for 1 h at 37°C. Finally, membranes were washed with PBST and the protein bands were detected using an ECL Western blot kit (Amersham Biosciences, UK).
+ Open protocol
+ Expand
6

Targeting HULC and UCA1 in LPS-induced Aortic Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Eleven-week C57BL/6 mice were intraperitoneally injected with a sub-lethal dose of LPS (1 mg/kg body mass). Control scramble siRNA or siRNA targeting HULC and UCA1 (13 μg/week in 100 μl volume) were administered by tail-vein injection, using equal volume mixtures of LipofectamineTM 2000. Two weeks later, mice were euthanized by CO2 narcosis. The aortic were carefully excised and fixed with 10% formalin solution. Paraffin sections (5 μm thickness) of aorta were prepared for immunohistochemistry (IHC) staining using anti-ICAM1 antibody (clone 1A29, Thermo Fisher Scientific), anti-VCAM1 (clone 429, Thermo Fisher Scientific), and anti-IL6 antibody (ab6672, Abcam). Images were scored based on percent staining by a pathologist blinded to the identity of the tissue specimens.
+ Open protocol
+ Expand
7

Western Blotting of Brain Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as described previously [20 (link)]. Briefly, the brain protein samples were prepared using Ripa Lysis buffer (Bio-Rad, CA), and equal amounts of protein were run on an SDS-PAGE gel. After being electrophoresed and transferred to a nitrocellulose membrane, the membrane was blocked and incubated with primary antibody overnight at 4 °C. The following primary antibodies were used: AdipoR1 (1:1000, ab126611), p-AMPKα (1:1000, ab133448), AMPKα (1:1000, ab32047), p-NFκB (1:1000, ab86299), NFκB (1:2000, ab16502), tumor necrosis factorα (TNFα) (1:1000, ab6671), interleukin-6 (IL-6) (1:1000, ab6672) (all from Abcam, MA), CTRP9 (1:500, NBP2–46834, Novus, CO), and adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 (APPL1) (1:1000, sc-271,901, Santa Cruz Biotechnology, CA). β-actin was used as an internal loading control. The respective secondary antibodies were incubated for 1 h at room temperature. The bands were probed with an ECL Plus chemiluminescence reagent Kit (Amersham Biosciences, Arlington Heights, PA) and visualized with the image system (Bio-Rad, Versa Doc, model 4000). Relative density of the protein immunoblot images were analyzed by ImageJ software (ImageJ 1.4, NIH, USA).
+ Open protocol
+ Expand
8

Comprehensive Protein Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was resolved by SDS-PAGE (10–15% Tris-Glycine), transferred onto Hybond nitrocellulose membrane (Amersham biosciences) and probed with antibodies specific for phospho-STAT3 (S727) (ab32143, abcam), phospho-STAT3 (Y705) (9131, Cell Signalling Technology (CST)), STAT3 (124H6: 9139, CST), phospho-NFκB p65 (S536) (93H1; 3033, CST), NFκB p65 (D14E12; 8242, CST), phospho-AKT (T308) (244F9; 4056, CST), phospho-AKT (S473) (D9E; 4060, CST), AKT (9272, CST), IL-6 (ab6672, abcam), HA (HA-7, Sigma H9658), GFP (B-2: sc-9996, SCBT), FLAG (F3165, Sigma), GAPDH (G-9, SCBT), PARP-1 (9542, CST) and Bcl-xL (2764, CST). Western blots were visualized with species-specific HRP conjugated secondary antibodies (Sigma) and ECL (Thermo/Pierce). Densitometry analysis was performed using ImageJ analysis software (NIH, USA).
+ Open protocol
+ Expand
9

Western Blot Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolated proteins (30 µg from every specimen as evaluated via BCA protein assay) were subjected to electrophoresis (8%‒12 % SDS-Tris glycine gel) and were transferred to the PVDF membranes. Membranes were blocked with the help of 5% skimmed milk within TBS-T buffer (10 mM Tris [pH 7.5], 100 mM NaCl, 0.1% Tween 20) and incubated with primary antibodies (GAPDH antibody [1:5000, ab8245, Abcam], IL-1beta antibody [1:5000, ab9722, Abcam], IL-6 antibody [1:2500, ab6672, Abcam], TNF-alpha antibody [1:2500, ab6671, Abcam], TRPV1 antibody [1:1000, ab10296, Abcam], phosphor-AKT antibody [1:1000, ab66138, Abcam], AKT antibody [1:5000, ab8805, Abcam], PI3K antibody [1:2000, ab86714, Abcam], phosphor-p65 antibody [1:1000, ab86299, Abcam], and p65 antibody [1:5000, ab16502, Abcam]) at room temperature. The membranes were then incubated with secondary antibodies, which were anti-rabbit antibodies (1:5000) conjugated with peroxidase. Bands were observed via an enhanced chemiluminescent substrate kit (provided by PIERCE) with the help of LAS-3000 Fujiflm (Fuji Photo Film Co. Ltd). Band intensity was quantified using ImageJ software (Bethesda, MD, USA).
+ Open protocol
+ Expand
10

Dot-Blot Immunodetection of Oxidative Stress Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following protein isolation and determination of concentration as described in the Western blot section, 20 µg of protein was transferred into each well to deposit on the nitrocellulose membrane (Sigma Aldrich, WHA10402506) via a Minifold I vacuum Dot-Blot system (Schleicher&Schuell, 10484138CP) [34 (link), 39 (link)], washed twice with 200 µL of PBS then dried for 60 min at 60 °C to adhere the proteins. The membranes were then cut and incubated in Ponceau S solution (Sigma, P7170) for protein visualization. The stain was removed and the membrane blocked for 1 h at room temperature with 5% milk in PBS-T. The membranes were incubated with antibodies against malondialdehyde (MDA)-positive proteins (Abcam, ab27642, 1:1000) as well as CD68 (Abcam, ab955, 1:1000), and interleukin 6 (Abcam, ab6672, 1:1000) overnight at 4 °C. The membranes were then treated in the same manner as those of Western blots.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!