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Lsm zen 2010

Manufactured by Zeiss
Sourced in Germany

The LSM ZEN 2010 software is a comprehensive imaging and analysis platform developed by Zeiss. It provides a user-friendly interface for the control and operation of Zeiss microscopy systems. The software enables the acquisition, processing, and analysis of high-quality images, supporting a wide range of microscopy techniques and applications.

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11 protocols using lsm zen 2010

1

Immunofluorescence Staining Protocol

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For IF staining of cells, around 8,000–10,000 cells were transferred onto each 3-aminopropylterithoxy saline (AAS, Sigma-Aldrich)-coated slide using the Shandon Cytospin Centrifuge (Thermos Electron, USA, Cambridge, UK) at the speed of 1,700 rpm for 10 min. Cell fixation was accomplished by 4% paraformaldehyde (PFA) for another 10 min at room temperature. For tissues, paraffin-embedded endometrial tissues were attached to the AAS-coated slides, followed by dewax, antigen retrieval, denaturation, and quenching procedures. To visualize protein expression in the nucleus, cells were permeabilized with 0.1% Triton X-100 for 15 min. Primary antibodies (Supplementary Table S3) were added and incubated overnight at 4°. On the following day, corresponding secondary antibodies were then added at room temperature for 1 h. Cell nuclei were stained with DAPI (Thermo Fisher Scientific), and the slides were mounted with a fluorescence mounting medium (Dako, Glostrup, Denmark). The fluorescent images were captured by a Carl Zeiss LSM 780 inverted confocal microscope and analyzed by Zeiss LSM Zen 2010 software (Carl Zeiss, Munich, Germany) at the Centre for PanorOmic Sciences (CPOS), the University of Hong Kong.
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2

Immunofluorescent Identification of CD140b+CD146+ Cells

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Double immunofluorescent staining was performed to evaluate the phenotypic of CD140b+CD146+ cells. Some of the cells after magnetic microbeading against CD140b and CD146 were plated at low seeding density of 10–30 cells/cm2 on fibronectin-coated 12-well plates and culture for 3–4 days. Cells were fixed with 4% paraformaldehyde for 20 min. Permeabilization was performed using 0.1% Triton-X 100 for 10 min and blocked with 2% BSA for 30 min. Cells were incubated with primary antibodies; anti-human CD140b (1:200; R&D Systems) and anti-human CD146 (1:100; Abcam, Cambridge, UK) antibodies at 4 °C overnight. The following day, cells were incubated with the secondary antibodies: donkey anti-mouse antibodies conjugated with Alexa Fluor 564 (1:200; ThermoFisher Scientific) and goat anti-rabbit antibodies conjugated with Alexa Fluor 488 (1:200; ThermoFisher Scientific). The cell nuclei were detected by DAPI (ThermoFisher Scientific). All washing steps were performed with PBS and conducted at room temperature unless specified. Images were captured using a Carl Zeiss LSM inverted confocal microscope and a Zeiss LSM Zen 2010 software (Carl Zeiss, Munich, Germany) at the Centre for PanorOmics Sciences (CPOS) Imaging and Flow Cytometry Core, The University Of Hong Kong.
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3

Immunofluorescence Staining of Cells

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For immunofluorescence staining, ~8000 cells were cytospun at 12,000 rpm for 10 min and fixed with 4% paraformaldehyde for 10 min. Permeabilization was conducted with 0.1% Triton-X 100 for 10 min, followed by blocking with 5% BSA for 30 min. Primary antibodies (Table S2) or isotype-matched control antibodies were incubated overnight at 4 °C. The next day, the corresponding secondary antibody (Table S3) was added and incubated for 1 h. The cell nuclei were detected by staining with DAPI (Thermo Scientific) and mounted with mounting medium (Dako). The slides were washed with PBST between steps and all the steps were conducted at room temperature unless specified. Multi-spectrum fluorescence images were captured using a LSM 710 inverted confocal microscope and a LSM ZEN 2010 software (Carl Zeiss, Munich, Germany) at the CPOS, The University of Hong Kong. The total cell number and number of triple positive (CD140b+CD146+NICD+) cells were counted. At least 500 cells were counted from each sample.
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4

Proximity Ligation Assay for NICD-β-catenin

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The in-situ interaction of NICD and active β-catenin was determined using the Duolink™ II secondary antibodies and detection kits (Sigma–Aldrich, #DUO92001, #DUO92005 and #DUO92008) according to the manufacturer’s instructions. First, fixed cells were incubated with the PLA probes and primary antibodies against NICD and β-catenin (Table S2) overnight at 4 °C. The Duolink™ secondary antibodies were added in the following day and incubated at 37 °C for 1 h. The secondary antibodies were ligated together to form a closed circle by the Duolink™ ligation solution when the antibodies were in proximity (<40 nm) to each other. Polymerase and amplification buffer were then applied to amplify the positive signal (red dot) of the resulting closed circles and the cells were visualized with a LSM 800 inverted confocal microscope and a LSM ZEN 2010 software (Carl Zeiss, Munich, Germany) at the CPOS, The University of Hong Kong. The total number of cells and positive signals were counted. At least 500 cells were counted from each sample.
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5

Immunofluorescent Staining of eMSCs

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The unfractionated endometrial stromal cells or eMSCs (8000–10,000 cells) were resuspended in growth medium and transferred to slides coated with 3-aminopropyl-triethoxysilane using a Shadon Cytospin Centrifuge (Thermo Electron, Waltham, USA) with centrifugation at 7500 rpm for 10 min followed by fixation in 4% paraformaldehyde for 20 min. Permeabilization was performed using 0.1% Triton-X 100 for 10 min and blocked with the corresponding serum for 30 min at room temperature. The slides were then incubated with the primary antibody (Additional file: Table S4) overnight at 4 °C, incubated with the secondary Alexa fluor donkey anti-rabbit 568 antibody (Thermo Scientific) for 1 h at room temperature. The cell nuclei were detected by DAPI (Thermo Scientific). Images were captured with a LSM 700 inverted confocal microscope and a LSM ZEN 2010 software (Carl Zeiss, Munich, Germany) at the Centre for PanorOmic Sciences (CPOS) imaging and Flow Cytometry Core, The University of Hong Kong.
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6

Immunostaining of Endometrial Stromal Cells

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The unfractionated endometrial stromal cells or eMSCs (8000 -10,000 cells) were resuspended in growth medium and transferred to slides coated with 3-aminopropyl-triethoxy silane using a Shadon Cytospin Centrifuge (Thermo Electron, Waltham, USA) with centrifugation at 7500 rpm for 10 minutes followed by xation in 4% paraformaldehyde for 20 minutes. Permeabilization was performed using 0.1% Triton-X 100 for 10 minutes and blocked with the corresponding serum for 30 minutes at room temperature. The slides were then incubated with the primary antibody (supplementary data Table S4) overnight at 4°C, incubated with the secondary Alexa uor donkey anti-rabbit 568 antibody (Thermo Scienti c) for 1 hour at room temperature. The cell nuclei were detected by DAPI (Thermo Scienti c). Images were captured with a LSM 700 inverted confocal microscope and a LSM ZEN 2010 software (Carl Zeiss, Munich, Germany) at the Centre for PanorOmic Sciences (CPOS) imaging and Flow Cytometry Core, The University of Hong Kong.
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7

Immunofluorescent Staining of eMSCs

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The unfractionated endometrial stromal cells or eMSCs (8000 -10,000 cells) were resuspended in growth medium and transferred to slides coated with 3-aminopropyl-triethoxy silane using a Shadon Cytospin Centrifuge (Thermo Electron, Waltham, USA) with centrifugation at 7500 rpm for 10 minutes followed by xation in 4% paraformaldehyde for 20 minutes. Permeabilization was performed using 0.1% Triton-X 100 for 10 minutes and blocked with the corresponding serum for 30 minutes at room temperature. The slides were then incubated with the primary antibody (Additional le: Table S4) overnight at 4°C, incubated with the secondary Alexa uor donkey anti-rabbit 568 antibody (Thermo Scienti c) for 1 hour at room temperature. The cell nuclei were detected by DAPI (Thermo Scienti c).
Images were captured with a LSM 700 inverted confocal microscope and a LSM ZEN 2010 software (Carl Zeiss, Munich, Germany) at the Centre for PanorOmic Sciences (CPOS) imaging and Flow Cytometry Core, The University of Hong Kong.
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8

Evaluating eMSC Phenotype by Immunofluorescence

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Double immunofluorescent staining was performed to evaluate the phenotypic of CD140b + CD146 + cells. Some of the eMSCs were plated at clonal density of 10-30 cells/cm 2 on fibronectin coated 12-well plates and culture for 15 days. Cells were fixed with 4% paraformaldehyde for 20 min. Permeabilization was performed using 0.1% Triton-X 100 for 10 min and blocked with 2% BSA for 30 min. Cells were incubated with primary antibodies; anti-human CD140b (R&D Systems) and antihuman CD146 (Abcam, Cambridge, UK) antibodies at 4 o C overnight. The following day, cells were incubated with the secondary antibodies; donkey anti-mouse antibodies conjugated with Alexa Fluor 564 (Invitrogen) and goat anti-rabbit antibodies conjugated with Alexa Fluor 488 (Invitrogen). The cell nuclei were detected by DAPI (Thermo Scientific). All washing steps were performed with PBS and conducted at room temperature unless specified. Images were captured using a Carl Zeiss LSM inverted confocal microscope and a Zeiss LSM Zen 2010 software (Carl Zeiss, Munich, Germany) at the University Of Hong Kong Core Facility.
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9

Immunofluorescence Staining of Wasp Venom Apparatus

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Immunofluorescence staining was conducted as described previously [40 (link)]. Briefly, the venom apparatus of 4-day old female wasps was dissected and fixed with 4% polyformaldehyde for 30 min, followed by rinsing with 0.3% phosphate buffered saline with Triton-X 100 solution (PBST) three times. Subsequently, samples were blocked for 1 h with 5% goat serum (Sangon Biotech, Shanghai, China), diluted in PBST and washed for 20 min with PBST three times. The rabbit anti-PvCRT primary antibody (diluted 1:100 in 5% goat serum) was incubated for 48 h at 4 °C. Rabbit serum that had not been immunized was used as control. Samples were washed for 20 min with PBST three times and incubated with the Dylight 488-conjugated goat anti-rabbit secondary antibody diluted 1:200 (Abbkine, Redlands, CA, USA) for 48 h at 4 °C. We mounted the samples using SlowFade™ Gold Antifade Mountant with DAPI (Life Technologies, Carlsbad, CA, USA). The immunofluorescence images were recorded under a Zeiss LSM 810 confocal microscope (Carl Zeiss SAS, Jena, Germany) and clarified by Zeiss LSM ZEN 2010 software (Carl Zeiss SAS, Jena, Germany).
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10

MicroRNA Expression Detection in Insect Wing Buds

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An antisense nucleic acid detection probe (5’-ACAACCAGCUAACCACACUGCCA -3’) designed to detect Nlu-miR-34 was labeled with Cy3. The probe for detecting NlInR1 (5’- GAACAGCCAGGACAGGCCGAAUCCUCCAUG-3') was labeled with FAM. The random shuffled probe (5’-UUCUCCGAACGUGUCACGUU-3’) and the probe (5’-UUGUACUACAAAAGUACUG-3’) were used as miRNA and mRNA negative controls, respectively. The wing buds were dissected from the third or fourth instar stage nymphs injected with agomir or antagomir (RiboBio, China). For fluorescence in situ hybridization, wing buds were treated for 24 h, fixed in 4% paraformaldehyde for 2 hours, and then incubated with the miRNA probes at 37°C for 24 h. The samples were washed in PBS containing Triton X-100 (5% v/v) and then incubated with the DAPI (RiboBio, China) at room temperature for 30 min. Signals were analyzed and images were recorded using a Zeiss LSM 780 confocal microscope (Carl Zeiss SAS, Germany). Figures were prepared using Zeiss LSM ZEN 2010 software (Carl Zeiss SAS, Germany).
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