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2 protocols using anti f4 80 d2s9r

1

Multiplex IHC for Tumor Immune Profiling

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Extracted tumors were fixed with 10% formalin, embedded in paraffin and sliced in 4 μm thickness. The multiplex IHC was performed with an Opal 7-Color Automation IHC Kit (Akoya Biosciences, Hopkinton, MA, USA) and BOND RXm automated stainer (Leica Biosystems, Wetzlar, Germany) using the following antibodies: anti-pan-cytokeratin (CK) (rabbit poly; Bioss, Woburn, MA, USA), anti-CD8α (EPR20305; Abcam, Cambridge, United Kingdom), anti-CD44 (IM7; Bio X Cell, Lebanon, NH, USA), anti-F4/80 (D2S9R; Cell Signaling Technology, Danvers, MA, USA), anti-Ly6G (1A8; Bio X Cell, Lebanon, NH, USA), anti-CD11b (EPR1344; Abcam, Cambridge, United Kingdom) and anti-Gzmb (rabbit polyclonal; Abcam, Cambridge, United Kingdom). The slides were imaged in the Mantra Quantitative Pathology Workstation (Akoya Biosciences, Menlo Park, CA, USA). The multiplex IHC images were analyzed using inForm Tissue Finder software (Akoya Biosciences, Menlo Park, CA, USA). Cell phenotype was defined based on the antigen expressions as the following: CD8+ = CD8+ T cell, F4/80+ = macrophage, Ly6G+CD11b+ = neutrophil, Gzmb+CD3− = NK cell. Tissue phenotype was determined as the following: pan-cytokeratin positive = tumor. CD8+ T cells in the tumor area were counted as tumor-infiltrating CD8+ T cells.
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2

Immunohistochemical Analysis of Xenograft Samples

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Serial 4-μm-thick paraffin sections from formalin-fixed, paraffin-embedded xenografts, obtained as described above (see In vivo studies) and as previously reported (8, 11 (link)), were processed according to standardized IHC procedures and then immunostained with the following antibodies: anti-CD47 (clone EPR21794; #ab218810, rabbit monoclonal, Abcam), anti-F4/80, (D2S9R) (#70076, rabbit polyclonal, Cell Signaling, RRID: AB_2799771), anti-CD206 (#ab64693, rabbit polyclonal, Abcam, RRID: AB_1523910), and anti-CD99 (O13) (#915601; BioLegend, RRID:AB_2565169). An avidin–biotin–HRP method was used for single staining (VECTASTAIN ABC kit, PK-4001, Vector Laboratories). A polymer with anti-mouse alkaline phosphatase and anti-rabbit HRP was used for dual staining (Mach2 Double Stain #1, #PBC-MRCT523L, Biocare Medical). For morphologic analyses, the slides were stained with hematoxylin and eosin.
Histologic and histomorphometric analyses were carried out with a digital pathology slide scanner with a resolution of 0.5 μm/pixel (Aperio AT2, Aperio Technologies, Vista, CA) using ImageScope software (v12.4.3, RRID: SCR_014311) for slide viewing and analysis.
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