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6 protocols using anti cd163

1

Immunofluorescence Analysis of CD163

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The paraffin sections were meticulously prepared by Servicebio (Wuhan, China), in accordance with prescribed procedures for antigen retrieval. Following a 30-minute blockade with 3% BSA, the primary antibody (Anti-CD163, 1:500, GB113751, Servicebio) was applied and allowed to incubate overnight at 4°C within a controlled humidified environment. Subsequently, the corresponding secondary antibody [Goat Anti-Mouse IgG (Alexa Fluor 594), 1:400, Jackson, 115-585-003] was administered, and cell nuclei were counterstained with DAPI (Thermo Fisher, D1306, USA). Fluorescence signals were then meticulously detected utilizing laser confocal microscopy (ZEISS LSM 800).
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2

Immunohistochemical Analysis of nccRCC Samples

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These nccRCCs tissue samples for scRNA-seq were also obtained form the Department of Pathology in our institution and performed IHC assay. To detect specific gene expression, the antibodies for IHC are as following: anti-CD163 (mouse, 1:100, servicebio, catalog no. GB14027), anti-TREM2 (rabbit, 1:100, Proteintech, catalog no. 27599–1-AP), anti-CD8 (rabbit, 1:1000, servicebio, catalog no. GB13068), anti-LAG3 (rabbit, 1:30, Abcam, ab209236). The number of double-positive cells in random 20 fields were counted and analyzed statistically.
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3

Macrophage Polarization Immunofluorescence Assay

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M1 and M2 macrophage polarization was observed by immunofluorescence staining. The marker of M1 and M2 macrophages are iNOS and CD163, respectively. The primary antibodies anti-iNOS (rabbit polyclonal antibody, 1:100) and anti-CD163 (goat polyclonal antibody, 1:100) from Servicebio (China) and the fluorescent second antibodies goat anti-rabbit (1:300) and rabbit anti-goat (1:300) from Servicebio (China) and DAPI from Abcam (United States) were used. After immunofluorescence staining, the paraffin sections were observed under a fluorescence microscope, and images were collected (DAPI emits blue light at 330–380 and 420 nm; FITC emits green light at 465–495 and 515–555 nm; Cy3 emits red light at 510–560 and 590 nm.). Eight visual fields were randomly selected from each slide, and three separate repeated experiments were conducted. All cells in the visual field were included in the statistical analysis.
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4

Immunohistochemical Profiling of Nasopharyngeal Carcinoma

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Clinical nasopharyngeal carcinoma samples and C57 BL/6 tumor xenografts were analyzed by the histochemical stain. Briefly, the paraffin-embedded sections of tumor tissues were deparaffinized and rehydrated. After antigen retrieval with 0.1M citrate buffer (pH 6.0), sections were blocked with 5% BSA for 30 minutes. The tumor samples were incubated with primary antibodies at 4°C overnight. Anti-EBV ZEBRA (BZLF1) (#sc-53904, Santa Cruz), anti-EBV EBNA1 (ab20870, Abcam), anti-CD34(#ZA-0550, ZSGB-bio), anti-CD163(#GB113152, Servicebio), anti-CD1a (#MA5-12526, Invitrogen) were used as the primary antibodies. PAS staining was performed using a PAS Staining Kit (#G1008, Servicebio). Images were acquired using Zeiss observer Z1, the numbers of classic angiogenesis were counted from three randomly chosen fields. Quantification of the positive area of CD1a versus CD163 was performed by the IHC Profiler function of IMAGE J.
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5

Immunofluorescence Staining of Lung Tissue

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Immunofluorescence staining was performed on both lung tissue and cellular slices through routine operation. For tissue staining, after dewaxing, rehydrating, antigen repairing, and blocking, paraffin-embedded tissue slices were incubated with diluted primary antibodies of anti-F4/80 (#GB11027, Servicebio), anti-Cytokeratin 7 (CK7, #GB11225, Servicebio), and/or anti-ADAR1 (#SC-73408, Santa Cruz), anti-cleaved-GSDMD (#AF4013, Affinity, Jiangsu, China), TUNEL (#GDP1043, Servicebio), anti-iNOS (#GB11119, Servicebio), or anti-CD163 (#GB11340-1, Servicebio) at 4 °C overnight, followed by incubation with their corresponding secondary antibodies at room temperature for 1 h in the dark. Between double staining procedures, 488-TSA (Servicebio) incubation and reantigen repair were conducted. DAPI (#G1012, Servicebio) was used for nuclear counterstaining. The slices were mounted with antifluorescence quenching sealing reagents (Boster, Wuhan, China) and captured under a fluorescence microscope (Life Technologies, Carlsbad, USA). For cellular staining, the primary antibodies used were anti-cleaved GSDMD (#AF4013, Affinity) and anti-caspase-1 (#GB11383, Servicebio). Mean fluorescence intensity (MFI) in a random field of view was measured using ImageJ software.
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6

Immunohistochemical Analysis of Liver Tissues

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Liver tissues were cut into 5-µm thickness slides and incubated with anti-CD68 (Servicebio) and anti-CD163 (Servicebio) overnight at 4°C, followed by incubation with secondary Cy3-labelled antibody (Servicebio) and HRP-labelled antibody (Servicebio) for 50 min at room temperature. Nuclei were counterstained with DAPI.
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