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Kinase tracer 236

Manufactured by Thermo Fisher Scientific

The Kinase Tracer 236 is a laboratory instrument designed to detect and measure kinase activity in biological samples. It utilizes fluorescence-based detection technology to quantify the phosphorylation of specific substrates, providing researchers with insights into the functional state of kinases within their experimental systems.

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13 protocols using kinase tracer 236

1

BTK Binding Affinity Determination by TR-FRET

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Example 201

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log[Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 4

Table 4 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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2

Determination of BTK Kinase Binding Affinity

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Example 201

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreenTM components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log[Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 4

Table 4 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM≤B≤100 nM; 100 nM≤C≤1 μM; 1 μM≤D≤10 μM; E>10 μM

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3

Kinetic Analysis of Fyn and Pyk2 Inhibition

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Isoforms of Fyn, FynB (PV6346) and FynT (P3042), were obtained from Invitrogen Life Technologies. AZD0530 was generously provided by Astra Zeneca. The activity rate of the isoforms was measured using the Omnia Tyrosine Peptide 5 kit (KNZ3051). Pyk2 (PV4567) was purchased from Invitrogen Life Technologies as well. The binding of Pyk2 to ATP in the presence of AZD0530 was measured using the LanthaScreen Europium Kinase Binding Assay which consisted of Kinase tracer 236 (PV5592), LanthaScreen Eu-Anti-GST antibody (PV5594), and Kinase Buffer (PV3189) all from Invitrogen Life Technologies. All experiments were run on a VICTOR3 (link) plate reader. Statistics to determine the kinetics of the interaction of enzyme and inhibitor were performed on Prism 6.0d.
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4

Determining BTK Binding Affinity Using TR-FRET Assay

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Example 201

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log[Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (San Diego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 4

Table 4 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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5

BTK Kinase Binding Affinity Assay

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Example 201

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log [Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 4 Table 4 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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6

BTK Binding Affinity Assay Protocol

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Example 96

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log [Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 5

Table 5 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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7

Highly Potent BTK Kinase Binding Assay

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Example 201

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log[Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (San Diego, Calif.).

Results of the BTKwT Binding Affinity are shown below in Table 4

Table 4 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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8

BTK Binding Affinity Assay by TR-FRET

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Example 96

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log [Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 5

Table 5 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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9

BTK Binding Affinity Assay Protocol

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Example 201

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log [Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 4

Table 4 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as “A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM<B≤100 nM; 100 nM<C≤1 μM; 1 μM<D≤10 μM; E>10 μM

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10

Binding Affinity Profiling of BTK Inhibitors

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Example 96

BTKWT binding affinity of each compound tested was determined using a time-resolved fluorescence resonance energy transfer (TR-FRET) methodology. 2.5 nM Recombinant BTKWT kinase, varying concentrations of inhibitor, 2 nM LanthaScreen™ Eu anti-His Antibody and 15 nM Kinase Tracer 236 was incubated in 1× LanthaScreen™ Kinase Buffer A for 5 h. Recombinant BTK kinase and all LanthaScreen™ components were purchased from Invitrogen. Measurements were performed in a reaction volume of 30 μL using half-area 96-well assay plates. The TR-FRET signal was read on a plate reader with an excitation wavelength of 340 nm and detection wavelengths of 615 and 665 nm. Binding affinity was determined for each compound by measuring TR-FRET signal at various concentrations of compound and plotting the relative fluorescence units against the inhibitor concentration to estimate the IC50 from log [Inhibitor] vs response using the Variable Slope model in Graphpad prism from Graphpad software (SanDiego, Calif.).

Results of the BTKWT Binding Affinity are shown below in Table 5 Table 5 shows the BTKWT Binding affinity, as determined by the assay described above, for compounds of formula (I), categorised based on the BTK IC50 value of the compound as

“A”, “B”, “C”, “D” and “E”.

IC50: A≤10 nM; 10 nM≤B≤100 nM; 100 nM≤C≤1 μM; 1 μM≤D≤10 μM; E>10 μM

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