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11 protocols using xbridge c18 analytical column

1

High pH Reversed-Phase Peptide Fractionation

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Samples were resolved with high pH reversed-phase liquid chromatography using an off-line Agilent 1200 series system (Agilent Technologies, Santa Clara, USA) with a Waters guard column (2.1×10 mm) and a Waters XBridge C18 analytical column (3.5 µm, 2.1×100 mm) (Waters Corporation, Milford, MA, USA). The peptides were resolved using a 3–60% mobile phase buffer B (20 mM ammonium formate, 90% acetonitrile) gradient over 75 minutes, at a flow rate of 150 µl/min. 16–18 fractions were collected across the elution profile, concentrated, and then dissolved in nanoLC buffer A (2% acetonitrile, 0.1% formic acid). Samples were stored at −20°C prior to tandem mass spectrometry analysis.
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2

HPLC Analysis of Tinospora crispa Extract

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HPLC analysis of T. crispa extract was performed according to the method of Ahmad et al. [9 (link)]. Briefly, a stock solution of 10 mg/mL of T. crispa in methanol was prepared and the solution was then filtered through PTFE membrane (0.45 μM) (Millipore, Maidstone, Kent, UK). A XBridge™ C18 analytical column (particle size, 5 μm; 4.6 mm × 250 mm) (Waters, Milford, Massachusetts, USA) was employed for the analysis. Quaternary Gradient Module (QGM) (Waters 2535) and photodiode array (PDA) detector (Waters 2998) were used (Waters, Milford, Massachusetts, USA). Solvent A (acetonitrile) and B (trifluoroacetic acid 0.02%) were used as mobile phase. The analysis was performed by elution at 10:90 (A:B) for 10 min followed by 25:75 elution for 25 min at a flow rate of 1.2 mL/min, and detection wavelength was at 254 nm. The extract was qualitatively and quantitatively analyzed using syringin and magnoflorine as standards. Syringin and magnoflorine in the extract were identified by comparing their UV spectra and retention times with those of standards, respectively, run individually.
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3

HPLC Analysis of BCD Granule Stability

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BCD granule stability and quality were evaluated utilizing a high-performance liquid chromatography (HPLC) system (Agilent 1100, USA) equipped with a Waters Xbridge-C18 analytical column (4.6 × 150 mm, 5 μm). Mobile phase A indicated the acetonitrile organic phase, while mobile phase B indicated the ultrapure water (containing 0.1% phosphoric acid) aqueous phase. Mobile phases were altered based on the following: 0–5 min, 10% (phase A); 5–35 min, 10%–20% (phase A); 35–50 min, 20%–30% (phase A); 50–55 min, 30%–37% (phase A), 55–60 min, 37%–10% (phase A). The flow rate was 1.0 ml/min and the UV spectrum was calibrated to 230 nm. Specnuezhenide (CAS: 39011-92-2), cyasterone (CAS: 17086-76-9), ferulic acid (CAS: 537-98-4) and isorhamnetin-3-O-neohesperidoside (CAS: 55033-90-4) were procured from National Institutes for Food and Drug Control (Beijing, China), and hyperoside (CAS: 482-36-0), asperosaponin VI (CAS: 39524-08-8), peoniflorin (CAS: 23180-57-6) and typhaneoside (CAS: 104472-68-6) were obtained from Shanghai Standard Technology Co., Ltd. (Shanghai, China). The detection wavelength of BCD was identified based on retention time compared with reference substance.
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4

LC-IT-MS Analysis of Compounds

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The LC-IT-MS analysis procedure employed the same separation conditions as used for the HPLC-DAD analysis mentioned above, on an Alliance 2690 Separation Module (Waters) using the same XBridge C18 analytical column as above (Waters). The injection volume and mobile phase flow rate were 10 μL and 1 mL/min, respectively. Approximately 2% of the column eluent was split to the MS using a microsplitter valve 203 (Upchurch Scientific, Oak Harbor, WA). A dual funnel amaZon ETD Ion Trap mass spectrometer (Bruker, Bremen, Germany) equipped with an orthogonal electrospray source was used for electrospray ionization ion trap mass spectrometry (ESI-IT-MS), and this was operated in positive-ion mode with sodium iodide being used for mass calibration in the range of m/z 100–1000. The optimal ESI conditions used were: capillary voltage 4500 V, source temperature 250 °C, N2 was used as the ESI drying gas at 4.0 L/min and as the nebulizer gas at 10 psi. The ion trap was set to UltraScan mode with a target mass of m/z 500 pass ions from m/z 100–1000.
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5

Peptide Stability in Diluted Human Serum

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Diluted human serum (25%; H4522 human serum, Sigma) was centrifuged at 15,000 rpm for 10 min, and the supernatant was collected. A peptide stock solution was diluted into the supernatant to give a final peptide concentration of 5 μM and incubated at 37 ℃. At various time points (0–24 h), 200 μL aliquots were withdrawn and mixed with 100 μL of 15% trichloroacetic acid and stored at 4 ℃ overnight. The final mixture was centrifuged at 15,000 rpm for 10 min in a microcentrifuge, and the supernatant was analyzed by reversed-phase HPLC equipped with a Waters XBridge C18 analytical column using a linear gradient from 5–60% acetonitrile (containing 0.05% TFA) in ddH2O (containing 0.05% TFA). The amount of remaining peptide (%) was determined by integrating the area underneath the peptide peak (monitored at 214 nm) and comparing with that from the peptide at time 0.
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6

TLC and LC-MS/MS Analysis of Compounds

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TLC experiments were performed using 0.2-mm silica-coated aluminum plates, being a 95:5 dichloromethane/methanol mixture the mobile phase. The plates were observed under UV light.
Agilent 1100 HPLC system (Agilent Technologies, Waldbronn, Germany) equipped with a Xbridge™ C18 analytical column (2.1 × 30 mm, 3.5 μM; Waters, Dublin, Ireland) was used in the chromatographic separation of LC-MS/MS analysis. An elution gradient of acetonitrile and water, with 0.1% of formic acid, was used as a mobile phase. MS spectra were taken at Applied Biosystems MDS Sciex API 200 triple quadrupole mass analyzer (Concord, Ontario, Canada) with an electrospray ionization (ESI) interface between HPLC and MS.
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7

Serum Stability Determination Protocol

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Whole human serum was diluted 1:4 (v/v) in sterile DPBS and equilibrated at 37 °C for 15 min. The indicated compounds (100 μM final concentration) were added to the diluted serum and incubated at 37 °C with gentle mixing. At designated time points, 100 μL aliquots were withdrawn and mixed with 100 μL of 15% trichloroacetic acid (TCA) in MeOH (w/v) and 100 μL of MeCN and stored at 4 °C for 24 h to effect complete de-proteinization. After protein precipitation was complete, each aliquot was centrifuged (15000 g, 5 min, 4 °C) and the supernatant was analyzed by reversed-phase HPLC using a Waters XBridge C18 analytical column and a linear gradient of 5–60% MeCN in ddH2O containing 0.05% TFA and a UV/Vis detector monitoring at 214 nm. The chromatograms were integrated and the area of the parent compound peak at t = 0 and each time point was used to determine the percentage of the parent compound remaining. Aliquots of the peak used for integration and comparison purposes were collected and analyzed by MALDI-TOF to ensure that the desired, intact parent compound was present and contributing to the observed absorbance at 214 nm.
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8

Peptide Fractionation and Phosphopeptide Enrichment

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The pooled TMT-labeled sample was separated using an 1260 Infinity HPLC system (Agilent) with an XBridge C18 analytical column (4.6×250 mm, 130 Å, 5 μm; Waters) and a guard column (4.6×20 mm, 130 Å, 5 μm; Waters). Solvents A and B were 10 mM TEAB in water (pH 7.5) and 10 mM TEAB in 90% acetonitrile (ACN, pH 7.5), respectively. Peptide fractionation was performed using a 120 minutes gradient at a flow rate of 500 mL/min as follows: 0% solvent B for 15 minutes, 0% to 5% solvent B over 10 minutes, from 5% to 35% solvent B over 60 minutes, from 35% to 70% solvent B over 15 minutes, 70% solvent B for 10 minutes, from 70% to 0% solvent B over 10 minutes. A total of 96 fractions were collected every minute from 15 to 110 minutes and were pooled into 24 non-continuous peptide fractions (i.e., #1-#25-#49-#73, #2-#26-#50-#74, …, #24-#48-#72-#96) and dried using a concentrator. For global proteome analysis, 5% of each fraction was aliquoted and dried using a vacuum concentrator. The remaining 95% concatenated fractions were further combined into 12 fractions and dried using a vacuum concentrator for phosphopeptide enrichment.
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9

UHPLC-MS/MS Quantitative Analysis Protocol

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A Nexera UHPLC system (Shimadzu, Kyoto, Japan) was coupled to a tandem quadrupole mass spectrometer (LCMS-8040, Shimadzu). Electrospray ionization with MRM was operated in positive mode. The MS parameters were as follows: capillary voltage, 4.0 kV; interface temperature, 300 °C; desolvation line temperature, 250 °C; heat-block temperature, 400 °C; heating gas (air), 10 L/min; nebulizing gas (N2), 3.0 L/min; and drying gas (N2), 10 L/min. Chromatographic separation was achieved using a Waters Xbridge C18 analytical column (100 mm × 2.1 mm; 3.5 μm particle size, Milford, MA, USA). The column oven was kept at 40 °C. The mobile phase consisted of (A) deionized water and (B) methanol, both containing 0.1% formic acid. The gradient program for chromatographic separation was programmed as follows: 95% of mobile phase A for 0.5 min from the start, which was decreased to 5% (A) linearly over 2.5 min and kept for 3 min, followed by an increase to 95% (A) in 0.5 min, which was maintained for 3.5 min. The flow rate was 0.2 mL/min, and the injection volume was 5 µL. The MRM transitions and parameters were optimized carefully by the injection of individual standard solutions (0.1 µg/mL) on UHPLC without an analytical column under an isocratic flow of 1:1 (mobile phase A and B).
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10

Quantification of Risperidone and Paliperidone in Biological Matrices

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Concentrations of RIS and the active metabolite, PAL, in plasma and bone marrow were determined by liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis as previously reported [17 (link)]. Briefly, RIS and PAL were extracted from both plasma and bone marrow via protein precipitation with acetonitrile. Separation was accomplished using a Waters XBridge C18 analytical column (3.0 x 50 mm, 3.5 μm). Mobile phase consisted of 0.1% formic acid in purified water (A) and 0.1% formic acid in acetonitrile (B). The flow rate was 0.4 mL/min, and heated to 60°C. Gradient elution was employed, with initial conditions 95% A and 5% B. Solvent composition was held at the initial conditions for 1.0 minutes, and then was ramped over the following 1.5 minutes to 95% B. Composition was maintained at 95% B for 1 minute. RIS and PAL were detected via an Agilent (Waldbronn, Germany) 6460 triple quadrupole mass spectrometer operated in positive ion MRM mode. The following transitions were monitored: RIS (411.2→191.0) and PAL (427.2→207.0). Significant differences between groups were determined by two-tailed T test using GraphPad Prism.
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