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2 protocols using ir dye labelled anti rabbit and anti mouse igg secondary antibody

1

Western Blot Analysis of Rnd1 and p65

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Cell monolayer was washed with PBS, and cells were harvested after 36 h of infection with standard ice-cold cell lysis buffer supplemented with 1X protease inhibitor cocktail (obtained from Sigma, Aldrich). Cells were collected and subjected to western blotting analysis as previously described [38 , 39 ]. Immunoblotted nitrocellulose membrane was imaged with LI-COR system. Anti–Rnd1 (HPA077800, raised in rabbit) and anti β-actin (A1978, raised in mouse) (6956, raised in mouse) antibodies were obtained from Sigma-Aldrich. Anti-p65 (6956, raised in mouse) was procured from Cell Signaling Technology. IR dye-labelled anti-Rabbit and anti-Mouse IgG (secondary antibody) were purchased from LI-COR. Densitometry analysis was performed by Image J (Fiji) software.
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2

Viral Infection and Cell Signaling Assays

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A549 human alveolar basal epithelial cells (Cell Repository, NCCS, India) and HEK293T human embryonic kidney cells (ATCC CRL-3216) were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin-streptomycin. Small airway epithelial cells (SAECs; Lonza) were cultured and maintained according to the manufacturer's instruction. Transfection of DNA and Poly(I-C) (InvivoGen) was performed with Lipofectamine 3000 (Invitrogen) in Opti-MEM as per the manufacturer's protocol. Cells were infected in serum-free DMEM with the A/Puerto Rico/8/34 (PR8/H1N1), or NDV Lasota viruses at the MOIs mentioned in the figure legends. After one hour, cells were washed with Phosphate buffered saline (PBS) and replaced with DMEM containing 1% FBS. DMEM, FBS, Opti-MEM, and penicillin-streptomycin were purchased from Invitrogen (Carlsbad, CA, USA).
Anti-FLAG, anti-β actin, and anti-γ Tubulin antibodies were purchased from Sigma Aldrich (St. Louis, MO, USA). Anti-Caspase-3 and Anti-Caspase-1 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). The anti-IFI16 antibody was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). IR dye-labelled anti-Rabbit and anti-Mouse IgG (secondary antibody) were purchased from LI-COR.
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