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Ontarget sirnas

Manufactured by Horizon Discovery
Sourced in Australia

OnTarget siRNAs are a product line of small interfering RNAs (siRNAs) developed by Horizon Discovery. The core function of OnTarget siRNAs is to induce targeted gene silencing in cells through RNA interference (RNAi) mechanisms.

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6 protocols using ontarget sirnas

1

Plasmid Constructs for YAP/TAZ and SLC7A11 Studies

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1C‐TAZ‐WT, 1C‐TAZ‐4SA, 1C‐TAZ‐4SA‐mNLS were kind gifts from Andras Kapus. pBabe‐puro‐HA‐EV, and pBabe‐puro‐HA‐YAP‐5SA were kind gifts from Alex Hergovich. pLenti‐CMV‐SLC7A11‐sh926R‐FLAG‐IRES‐Hygro was purchased from Addgene (# 118702). To generate pSuper‐retro‐puro‐shYAP/TAZ construct, the oligonucleotide 5′‐TGTGGATGAGATGGATACA‐3′ which targets both YAP and TAZ mRNAs was cloned into pSuper‐retro‐puro vector. To generate pGL4.10‐SLC7A11, a DNA fragment from −1,000 bp to +200 bp containing the SLC7A11 promoter was cloned into the pGL4.10 vector.
On‐target siRNAs were purchased from Horizon Discovery and are listed in Appendix Table S1. Antibodies used are listed in Appendix Table S2, and PCR primers are listed in Appendix Table S3.
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2

Construct Generation for HIF1α and USP29

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A cDNA construct encoding for Flag-HIF1α was amplified from a cDNA library and cloned into pcDNA4.0, and Myc-USP29 was amplified from a cDNA library and cloned into pcDNA4/TO/myc-His B. To generate pBabe-USP29, a cDNA fragment coding for USP29 was cloned into pBabe-retro-puro-empty vector. To generate Myc-USP29-CA, Myc-USP29 was mutated at C294S and H831N. pGL4.42 and pRL-CMV were purchased from Promega. On-target siRNAs were purchased from Horizon Discovery. siUSP29#1, siUSP29#2 were ordered from Microsynth and are listed in Suppl. Table II. Myc-USP29-R was mutated on Myc-USP29 to be resistant to siUSP29#1, primers are listed in Suppl. Table II. The Sequences of siRNAs are presented in Suppl. Table II, antibodies used are listed in Suppl. Table III, and oligonucleotides are listed in Suppl. Table IV.
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3

Dermal Cell Signaling Modulation

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Dermal fibroblasts or endothelial cells from dcSSc patients were treated with 10 µM of LATS kinase inhibitor TRULI/Lats-IN-1 (MedChenExpress HY-138489) or YAP/TEAD inhibitor verteporfin (Cayman Chemical 17334) 0.1–10 µM for 48 to 72 h. Gene knockdown was done using Accell siRNAs (Dharmacon) in dermal fibroblasts and OnTarget siRNAs (Dharmacon) in dermal ECs, following protocols recommended by the manufacturer.
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4

Intranasal siRNA Delivery for Asthma

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ON-TARGET siRNAs were purchased from Dharmacon (Millennium Science, Mulgrave, Australia) at a concentration of 50nmols. These siRNAs include an antisense strand sequence of MID1 siRNA (5-AGAGUAAUCUCACCAAUCU-3') and a Nonsense (NONc) strand of siRNA (5'-UGGUUUACAUGUCGACUAA-3') to evaluate any potential off-target effects. Mice were intranasally administered 3.75nmols (in 25μL of sterile saline) of either MID1 or NONc siRNA 24 hours prior to the first Asp F challenge. This dose was repeated every second day throughout the course of the model.
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5

Inflammasome Activation Protocols

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On-target siRNAs were obtained from Dharmacon technologies (Thermo), and siRNA of non-targeting pool was used as a negative control. siRNA were transfected using TransIT TKO (Mirus Bio) as per manufactuer’s instructions. HEK293T cells were transfected with plasmids using TransIT/LT1 following manufacturer’s instruction, and the transfection efficiency was achieved more than 92%. One hour before inflammasome activation, cells were transfected with CagA peptide (GFPLKRHDGVDDLSKVG) and control peptide (GFPGKGHDGGDDGSKVG) (synthesized by Thermo Scientific or Caslo Denmark) at the indicated concentrations following manufacturer’s instruction of DOTAP reagent. Flagellin and double-stranded DNA were transfected with DOTAP reagent.
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6

Transfection and siRNA Knockdown Assay

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Transfections were performed with Oligofectamine according to the manufacturer's protocol. Unless stated otherwise, cells were seeded at 2×105 per well in a six-well dish and transfected with 100 nM siRNA for 24 or 48 hours with transfections. ONTarget siRNAs were obtained from Dharmacon for the following targets: random sequence control (D-001810-01-20), SIRT1 (M-003540-01-0005), FZD7 (L-003671-00-0005), and β-catenin (M-003482-00-0005). For inhibitor studies, cambinol (Sigma C0494) and inhibitor VII (Calbiochem 566327) were resuspended in DMSO.
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