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Cy3.5 ap3 dutp

Manufactured by GE Healthcare
Sourced in United Kingdom

Cy3.5-AP3-dUTP is a fluorescent dye-labeled nucleotide used in various molecular biology applications. It can be incorporated into nucleic acid sequences during enzymatic reactions, enabling the visualization and detection of the labeled molecules.

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3 protocols using cy3.5 ap3 dutp

1

Genomic Mapping of An. lesteri

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The Genome sequences were acquired from the An. gambiae PEST strain (https://www.vectorbase.org/organisms/anopheles-gambiae/pest) and An. sinensis (https://www.vectorbase.org/organisms/anopheles-sinensis/sinensis). The PCR primers were designed using the Primer3 Program [21 (link)], based on the above genome sequences from An. gambiae and An. sinensis. Genomic DNA of An. lesteri was extracted from live fourth-instar larvae, using a DNeasy Blood & Tissue Kit (Qiagen GmbH, Hilden, Germany), and utilized as a template for PCR.
After the standard PCR procedures, amplified PCR products were loaded on agarose gel and cut for purification using a QIAquick Gel Extraction Kit (Qiagen). The DNA fragments were labeled with either Cy3.5-AP3-dUTP or Cy5.5-AP3-dUTP (GE Healthcare UK Ltd, Chalfont StGiles, UK), using a Random Primed DNA Labelling Kit (Roche Applied Science, Penzberg, Germany). In situ hybridization was performed using a previously described method [20 (link)]. Fluorescent signals were detected and recorded with a Zeiss LSM 710 laser scanning microscope (Carl Zeiss Microimaging GmbH, Oberkochen, Germany), and placed on the polytene chromosome map of An. lesteri.
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2

Cytogenetic Mapping of An. sinensis

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Genome sequences of the An. sinensis China strain were acquired from the database of Zhou et al. [10 (link)]. Polymerase chain reaction (PCR) primers for An. sinensis scaffolds were designed using the Primer3 Program [18 (link)]. PCR procedures were performed with genomic DNA of Anopheles lesteri extracted from live fourth-instar larvae with the DNeasy Blood & Tissue Kit (Qiagen GmbH, Hilden, Germany) as templates. After PCR amplification, the PCR products were cut and purified from the agarose gel using a QIAquick Gel Extraction Kit (Qiagen GmbH, Hilden, Germany) and then labelled with either Cy3.5-AP3-dUTP or Cy5.5-AP3-dUTP (GE Healthcare UK Ltd. Chalfont St Giles, UK) using a Random Primed DNA Labelling Kit (Roche Applied Science, Penzberg, Germany). Following the in situ hybridization procedure performed using a previously described method [19 (link)], fluorescent signals were detected and recorded with a Zeiss LSM 710 laser scanning microscope (Carl Zeiss Microimaging GmbH, Oberkochen, Germany) and finally mapped to the cytogenetic map of An. sinensis [17 (link)].
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3

In situ Hybridization of Anopheles Mosquitoes

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Primers were designed with the Primer3 Program (Rozen and Skaletsky, 2000 (link)) based on sequences from the An. gambiae genome (www.vectorbase.org) and our unpublished sequence data. The genomic DNA of An. sinensis was extracted from live 4th-instar larva with a DNeasy Blood & Tissue Kit (QIAGEN GmbH, Germany). This was used as a template for PCR. The PCR products were gel purified with a QIAquick Gel Extraction Kit (QIAGEN GmbH, Germany). DNA was labeled either with Cy3.5-AP3-dUTP or with Cy5.5-AP3-dUTP (GE Healthcare UK Ltd., Buckinghamshire, England) using a Random Primed DNA Labeling Kit (Roche Applied Science). The in situ hybridization procedure was conducted as previously described (Sharakhova et al., 2006 (link)). The chromosomes were washed in 0.2X SSC (Saline-Sodium Citrate: 0.03 M Sodium Chloride, 0.003 M Sodium Citrate), counterstained with YOYO-1, and mounted in DABCO. Fluorescent signals were detected and recorded with a Zeiss LSM 710 Laser Scanning Microscope (Carl Zeiss Microimaging GmbH, Germany).
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