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3 protocols using ab51500

1

Chromatin Remodeling Protein Profiling

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BAF53A: LifeSpan Biosciences LS-C196606 (Western). EZH2: Millipore 07-400 (ChIP, IP, Western). INO80: Abcam ab105451 (ChIP, IP, Western). MCRS1: Proteintech 11362-1-AP (ChIP). RUVBL1: Bethyl A304-716A (ChIP) and Abcam ab51500 (Western). RUVBL2: Bethyl A302-537A (ChIP) and Abcam ab89942 (Western). SUZ12: Cell Signaling 3737S (Western). YY1: Santa Cruz sc-1703 (Western).
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2

Probing RARα-Pontin Interaction in Retinoic Acid Signaling

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To study the interaction between RARα and Pontin under RA
stimulation condition, we used NTERA-2 cells treated with 5uM retinoic acid for
24 hours. Cytoplasmic/nuclear fractionation was performed as previously
described [45 (link)–47 (link)]. Nuclear pellets were collected and lysed with
NP-40 lysis buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP-40, 0.1% Triton
X-100. 1 mM PMSF and 1x protease inhibitor were freshly added.). Sonication was
performed for 3 minutes with Q800R sonicator (QSonica) at 4°C to improve
lysis before centrifuging to collect nuclear lysate. The nuclear lysate was
precleared using 10 μl Dynabeads Protein G (Life Technologies) and 2
μg anti-RARα rabbit polyclonal antibody (sc-551, Santa Cruz) was
added to lysate and incubated at 4°C overnight. The protein complex was
collected using 20 μl Dynabeads Protein G and washed 6 times with NP-40
lysis buffer before elution with 2x SDS loading buffer. The antibodies used for
Western Blot detection were: anti-RARα mouse monoclonal antibody
(sc-515796, Santa Cruz) and anti-Pontin mouse monoclonal antibody (Ab51500,
abcam).
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3

Quantification of Protein Expression

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The total protein was extracted from cells using RIPA lysis (Beyotime Biotechnology, Shanghai, China) containing PMSF (Thermo Fisher Scientific), and the protein concentration was determined using the BCA kit (20201ES76, Yeasen Biotechnology Co., Ltd., Shanghai, China). Quantification was performed according to different concentrations, and the protein was transferred onto a PVDF membrane (Millipore, Billerica, MA) through polyacrylamide gel electrophoresis. The membrane was blocked in 5% bovine serum albumin for 1 h at room temperature and incubated with primary antibodies against RUVBL1 (ab51500, 1: 100, Abcam, Cambridge, UK), CTNNB1 (ab273712, 1: 1000, Abcam), CDK2 (ab32147, 1: 1000, Abcam), CCND1 (ab16663, 1: 200, Abcam) at 4 °C overnight. The membrane was re-probed with horseradish peroxidase-labeled goat anti-rabbit IgG (ab6721, 1: 5000, Abcam) or goat anti-mouse IgG (ab6789, 1: 5000, Abcam) for 1 h at room temperature. The luminescent solution was added for development. Protein quantification analysis was performed by ImageJ software (National Institutes of Health) as normalized to GAPDH.
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