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Amv rna pcr kit 3

Manufactured by Takara Bio
Sourced in Japan

The AMV RNA PCR Kit 3.0 is a product designed for the reverse transcription and amplification of RNA. It includes reagents necessary for the conversion of RNA to cDNA and subsequent PCR amplification.

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5 protocols using amv rna pcr kit 3

1

Flower Bud RNA Expression Profiling

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Total RNA samples from flower buds at four different development phases (JCFI, JCFII, JCFIII and JCFIV) (Fig. 2) were used for expression pattern analysis of 16 selected DEGs (Table S5). The total RNA (1 µg) of each sample was used for first-strand cDNA synthesis using AMV RNA PCR Kit 3.0 (Takara). qPCR was performed on an ABI StepOnePlus Real-Time PCR System (Applied Biosystems, Inc. USA) using 2 × SYBR green PCR mix (QIAGEN, Shanghai, China). The β-tubulin gene was chosen as the endogenous reference gene for the qPCR analysis. The primers used for qPCR analysis are listed in Supplementary Table S1. Each sample has three biological replicates. The average threshold cycle (Ct) was calculated, and the relative expression level of each gene was then calculated according to the 2−ΔΔCt method. A one-way ANOVA was performed on the gene expression level of the samples at different development stages using the software Statistical Package for the Social Science (SPSS) version 11.5 (SPSS Inc., Chicago, IL, USA). The individual treatment means were compared using the LSD (least significance difference) test.
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2

Quantitative RT-PCR for Stress Genes

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AMV RNA PCR Kit 3.0 (Takara, Kusatsu, Japan) was used to reverse-transcribe the total RNA according to the manufacturer’s protocol. SYBR Premix Ex Taq™ Kit (Takara, Kusatsu, Japan) was used to perform qRT-PCR reactions with primers for BjABR1, RD29B, RD22, ABI3, and 18S rRNA genes. The 18S rRNA gene was used as the internal control. The primer pairs are listed in Table S1. A Bio-Rad iQ5 realtime PCR detection was used to perform the qRT-PCR reactions. Three replicates per sample were examined.
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3

Jatropha curcas Gene Expression Analysis

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Total RNA was isolated from Jatropha curcas flower buds or leaves using E.Z.N.A Total RNA Kit (OMEGA) according to the manufacturer's protocol. cDNA was synthesized with an AMV RNA PCR Kit 3.0 (Takara) in 10 µL of reaction mixture containing 1 µg of total RNA according to the manufacturer's instructions. Quantitative PCR was performed with the ABI StepOnePlus Real-Time PCR System (Applied Biosystems, Inc. USA) using 2 × SYBR green PCR mix (QIAGEN, Shanghai, China). To analyze the expression of JcGAST1 in flower development, the flower bud samples were divided into eight development phases as previously described (Xu et al., 2019) . To quantify the transcriptional levels of JcGAST1 in response to phytohormones treatment, threemonth-old Jatropha curcas seedlings were treated with 100 µM MeJA, 100 µM GA 3 , 100 µM IAA or 100 µM SA, respectively, and leaves that collected at 3 h and 24 h after phytohormones treatment were used for total RNA extraction. The primers used for qPCR are listed in Supporting Information Table S1. JcTUB was used as an internal positive control.
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4

Hypothalamus Total RNA Extraction

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Total RNA was extracted from the hypothalamus of the sacrificed rodents using TRIzol reagent (D9108A, TaKaRa, Osaka, Japan). The concentration and the purity of total RNA were examined by the A260/A280 ratio using an ultraviolet spectrophotometer (Eppendorf, Hamburg, Germany). The integrity of total RNA was also checked using agarose gel electrophoresis. According to the instructions of TaKaRa RNA PCR Kit (AMV) 3.0, all RNA samples were reverse-transcribed using the AMV reverse transcriptase (2621, TaKaRa, Osaka, Japan) and an oligodeoxythymine (oligo(dT)18) (3806, TaKaRa, Osaka, Japan). All cDNAs obtained were stored at −80 °C.
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5

RT-PCR Analysis of Stem Cell Markers

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RT-PCR was performed as previously described [23 (link)]. Briefly, total RNA was isolated from HUMSCs and HUMSC–SC co-cultures using Trizol reagent (Invitrogen, New York, USA), according to the manufacturer’s instructions. RT-PCR was performed using the RNA PCR Kit (AMV) 3.0 (TaKaRa, Da lian, China, Japan). PCR conditions were 2 minutes at 94°C, then 35 cycles of 94°C for 30 seconds, 50 to 65°C for 30 seconds, 72°C for 30 seconds, and a final extension for 10 minutes at 72°C. PCR products were resolved by 1.2% (w/v) agarose gel electrophoresis, visualized by ethidium bromide staining, and photographed under ultraviolet light. The human housekeeping gene β-actin was used as a normalization control. The sequences of human-specific primer sets used for PCR were as follows: VASA (NM_024415.2, 191 bp), forward 5’-AAG AGG TAG TTT CCG AGG TTG C-3’and reverse 5’-CTT TGT AAC CAC CTC GTT CAC T-3’; DAZL (NM_001351, 487 bp), forward 5’-ATC ATC CTC CTC CAC CAC AG-3’ and reverse 5’-GAT TTA AGC ATT GCC CGA CT-3’; STELLA (NM_199286, 315 bp), forward 5’-CTC CAC AAA TGC TCA CCG AA-3’ and reverse 5’-GCT CCT TGT TTG TTG GTC TTC T-3’; and β-actin (NM_001101, 396 bp), forward 5’-CAC ACT GTG CCC ATC TAC GA-3’ and reverse 5’-TAC AGG TCT TTG CGG ATG TC-3’.
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