The largest database of trusted experimental protocols

10 protocols using polytron pt 3100 homogenizer

1

Extraction and Purification of Fumonisins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Corn powder (8 g), 40 mL of methanol/water (75:25, v/v), and 0.4 mL of acetic acid (>99.9%) were homogenized with a POLYTRON PT3100 homogenizer (Kinematica AG., Lucerne, Switzerland) at a rate of 7000 rpm for 5 min, and centrifuged at 2000× g for 10 min. A portion of the supernatant (5 mL) was loaded onto a strong anion exchange column (Sep-Pak Accell Plus QMA Short Cartridge (360 mg), Waters, Milford, MA, USA) with no conditioning. Then 5 mL methanol/water (3:1, v/v) and 5 mL methanol were successively loaded on the column for washing. The FBs were eluted with 5 mL of a solution methanol/acetic acid (98:2, v/v). All of the eluent was collected in a glass tube, and the solvent was evaporated under a nitrogen gas stream at 50 °C. The residue was dissolved in 0.25 mL of acetonitrile/water/acetic acid (5:94:1, v/v/v) and subjected to LC-MS analysis.
+ Open protocol
+ Expand
2

Cryogenic Lens Homogenization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lenses excised from normal mouse eyes were briefly immersed into dry ice then fragmented. The fragments were allowed to thaw, then homogenized in PBS-protease and phosphatase inhibitors using a Polytron PT 3100 homogenizer (Kinematica, Lucerne, Switzerland) [42 (link)]. Aliquots of the total homogenate were stored at -80°C until use.
+ Open protocol
+ Expand
3

Quantitative RT-PCR Analysis of DRG

Check if the same lab product or an alternative is used in the 5 most similar protocols
Frozen DRG samples were processed using a Polytron PT 3100 homogenizer (Kinematica, Luzern, Switzerland). Total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer’s instructions. Five hundred ng of RNA were then reverse transcribed with TaqMan Reverse Transcription Reagents (Applied Biosystems, Darmstadt, Germany). Five µl of cDNA per sample were assessed with quantitative real-time PCR using TaqMan Universal Master Mix and the following target specific predesigned mouse TaqMan Gene Expression Assays (Applied Biosystems, Darmstadt, Germany; Assay-IDs in brackets): TRPV1 (Mm01246302_m1), HCN2 (Mm00468538_m1), Nav1.7 (Mm00450762_s1). 18 s rRNA (Hs99999901_s1) was used as an endogenous control. Quantitative real-time PCR reactions were performed in the 96-well GeneAmp PCR System 9700 cycler with the following cycler conditions: 2 min, 50°C; 10 min, 95°C; (15 s, 95°C; 1 min, 60°C) x40. Relative gene expression was calculated using the 2-ΔΔCt method.
+ Open protocol
+ Expand
4

RNA Extraction and RT-qPCR Analysis of tHIOs

Check if the same lab product or an alternative is used in the 5 most similar protocols
tHIOs were homogenized with a Polytron PT3100 homogenizer (Kinematica). RNA was then extracted from the tHIOs using the E.Z.N.A Total RNA kit I (Omega Bio-Tek) according to the manufacturer’s instructions. Take3 Micro-Volume Plate (BioTek) in a Cytation 5 reader (BioTek) was used to determine RNA concentration and purity. The cDNA was synthesized using an iScript reverse transcription kit (BIO-RAD) with a Mastercycler (Eppendorf). RT-qPCR was performed using PowerUp SYBR Green Master Mix (ThermoFisher Scientific) according to the manufacturer’s instructions for the fast protocol on a CFX Touch Real-time PCR Detection System (BIO-RAD). Primers were obtained from Integrated DNA Technologies and are listed in Table 1.
+ Open protocol
+ Expand
5

Wound Inflammatory Cytokine Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Wound tissues removed 0, 4, 24, 48, 120, 216 and 288 hours after surgery were immediately frozen (-80°C) until they were homogenized using PBS plus protease inhibitors (0.5 M PMSF and 25 IU mL–1 aprotinin). The tissue (100 mg) was homogenized in a Polytron PT 3100 homogenizer (Kinematica, Lucerne, Switzerland). TNF-α, IL-1β, CINC-2α/β, MIP-3, IL-6 and VEGF-α levels were assessed using ELISA (Quantikine DuoSet, R&D Systems, Minneapolis, MN, USA). The concentrations were normalized to the amount of protein in the samples, which was determined using the classical Bradford method.
+ Open protocol
+ Expand
6

Fabrication of Heparin Microparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Heparin microparticles were fabricated as previously described (37 (link),38 (link)). Briefly, EDC/Sulfo-NHS chemistry was used to substitute methacrylamide groups on heparin. Heparin methacrylamide was then dissolved in phosphate-buffered saline (PBS) and mixed with equimolar amounts of the free radical initiators, ammonium persulfate (Sigma Aldrich) and tetramethylethylenediamine (TEMED, Sigma Aldrich). A water-in-oil emulsion was then formed by adding the heparin solution dropwise into 60mL of corn oil and 1mL of polysorbate 20 (Promega) and then homogenized on ice for 5 min at 3000rpm (Polytron PT3100 Homogenizer, Kinematica). Free radical polymerization and thermal cross-linking of the methacrylamide groups was carried out by immersing the emulsion in a 55˚C water bath under constant stirring and nitrogen purging for 30 minutes. The HMPs were collected following centrifugation for 10 minutes at 3000rpm and subsequently washed in acetone, deionized water several times, and 70% ethanol for sterilization. HMPs were lyophilized and stored at 4˚C until ready for incorporation into the alginate constructs. HMPs were characterized following fabrication and confirmed to retain their functionality with evaluation of growth factor binding and release kinetics (38 (link)).
+ Open protocol
+ Expand
7

Protein Foam Capacity and Stability

Check if the same lab product or an alternative is used in the 5 most similar protocols
The foams were prepared by a method described by Aderinola et al. (33 (link)). The protein mixtures (10, 15, and 20 mg/mL) were prepared in 0.1 M phosphate buffers at pH 3.0, 5.0, 7., or 9.0 and homogenized at 20,000 rpm for 1 min using a 20 mm foaming shaft on the Polytron® PT 3100 homogenizer (Kinematica AG, Lucerne, Switzerland). The foam capacity and stability were determined as follows:
+ Open protocol
+ Expand
8

Quantifying Neuronal Nav1.7 Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
For protein analysis, ten to twelve DRG pairs per mouse were dissected (see above) and frozen at −80°C until further processing. To achieve sufficient tissue weight (i.e. ≥300 mg), DRG of at least three mice were pooled on ice and were processed using a Polytron PT 3100 homogenizer (Kinematica, Luzern, Switzerland) in 500 µl phosphate buffered saline containing 20 µl protease inhibitor. The suspension was centrifuged 15 min at 1500 g and the supernatant was separated in aliquots à 200 µl. A mouse Nav1.7 enzyme-linked immunosorbent assay kit (BlueGene, 0,1 ng/ml, cat# E03N0034, Shanghai, China) was used to determine Nav1.7 protein expression together with provided standards, following the manufacturer`s instructions and using undiluted samples.
+ Open protocol
+ Expand
9

RNA Extraction and RT-qPCR Analysis of tHIOs

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tHIOs were homogenized with a Polytron PT3100 homogenizer (Kinematica). RNA was then extracted from the tHIOs using the E.Z.N.A Total RNA kit I (Omega Bio-Tek) according to the manufacturer’s instructions. A Take3 Micro-Volume Plate (BioTek) in a Cytation 5 reader (BioTek) was used to determine RNA concentration and purity. A minimum quantity of 200 ng of RNA with a 260/280 ratio of 1.8–2.2 was included in analysis. The cDNA was synthesized using an iScript reverse transcription kit (BIO-RAD) with a Mastercycler (Eppendorf). RT-qPCR was performed using PowerUp SYBR Green Master Mix (ThermoFisher Scientific) according to the manufacturer’s instructions for the fast protocol on a CFX Touch Real-time PCR Detection System (BIO-RAD). Primers were obtained from Integrated DNA Technologies and are listed in Supplemental Table 3.
+ Open protocol
+ Expand
10

Heparin-Based Microparticle Fabrication

Check if the same lab product or an alternative is used in the 5 most similar protocols
HMPs were fabricated as previously described [32 (link)] and as schematized in Figure 1A. Briefly, 55.6 mg of heparin methacrylamide, 18 mM ammonium persulfate (APS; Sigma Aldrich), and 18 mM tetramethylethylenediamine (TEMED; Sigma Aldrich) were dissolved in phosphate buffered saline (PBS; Corning Mediatech, Manassas, VA). 500 μL of heparin solution was homogenized for 5 minutes at 3000 rpm into a mixture of 60 mL of corn oil (Mazola) and 1 mL of polysorbate 20 (Promega, Madison, WI) using a Polytron PT3100 homogenizer (Kinematica, Lucerne, Switzerland). The emulsion was immersed in a 55°C water bath, and the free radical cross-linking reaction proceeded under constant stirring and nitrogen purging for 30 minutes. The solution was centrifuged for 10 minutes at 3000 rpm, and the resulting HMP pellet was washed once in acetone and several times in ddH2O, prior to being disinfected in 70% ethanol for 30 minutes. The HMPs were lyophilized (Labconco, Kansas City, MO) and stored at 4°C until use.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!