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6 protocols using anti cd63 antibody

1

Isolation and Characterization of CD63+ EVs

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A fraction was isolated from HUVEC-derived EVs using magnetic beads coated with anti-CD63 antibody (10606D, ThermoFisher). Briefly, EVs isolated from HUVEC by differential ultracentrifugation were incubated with magnetic beads coated with anti-CD63 antibody overnight. The bead-bound CD63+ EVs were selected using a DynaMag-5 magnetic separator (12303D, ThermoFisher), stained with PE-Cy7-anti-human CD63, FITC-anti-human CD9 and APC-anti-human CD81 (BD) antibodies and then analyzed by flow cytometry.
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2

Comprehensive Protein Analysis by Western Blotting

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Western blotting was conducted according to a protocol previously described [43 (link)]. Briefly, the tissues were lysed with radioimmunoprecipitation assay buffer (Applygen, Beijing, China) for 30 min and then homogenized using an ultrasound treatment at 100 W for 3 min and centrifuged at 12,000 × g for 20 min. Protein concentrations were quantified using the bicinchoninic acid assay. The proteins were then denatured with sodium dodecyl sulfate (SDS) protein loading buffer (Applygen) and were separated by SDS-polyacrylamide gel electrophoresis (15 μg per well). Samples were transferred to membranes and immunoblotted with the following primary antibodies: anti-GAPDH antibody (1:2000, Abcam, Cambridge, UK), anti-GAP43 antibody (1:1000, Abcam), anti-LAMP-2 antibody (1:500, Abcam), anti-SNAP25 antibody (1:1000, Abcam), anti-Alix antibody (1:1000, Cell Signaling Technology, Danvers, MA, USA), anti-TSG101 antibody (1:2000, ThermoFisher Scientific), anti-CD63 antibody (1:1000, ThermoFisher Scientific), and anti-APOB antibody (1:1000, ThermoFisher Scientific).
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3

Exosome Isolation from Scratched Cells

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After 48 hours from scratching, exosomes were isolated from the cell culture medium using the Total Exosomes Isolation (from cell culture medium) Kit (Thermo Fisher Scientific, Waltham, MA, USA) starting from 10 ml of medium per sample and resuspended in 200 μl of PBS 1X. Exosomes were also isolated from culture medium of confluent cells not subjected to scratches. The presence of exosomes was verified using anti-CD63 antibody (Thermo Fisher Scientific, Waltham, MA, USA) with a Western Blot detection on all the three cancer cell lines (data not shown).
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4

Isolation and Characterization of CD63+ EVs

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A fraction was isolated from HUVEC-derived EVs using magnetic beads coated with anti-CD63 antibody (10606D, ThermoFisher). Briefly, EVs isolated from HUVEC by differential ultracentrifugation were incubated with magnetic beads coated with anti-CD63 antibody overnight. The bead-bound CD63+ EVs were selected using a DynaMag-5 magnetic separator (12303D, ThermoFisher), stained with PE-Cy7-anti-human CD63, FITC-anti-human CD9 and APC-anti-human CD81 (BD) antibodies and then analyzed by flow cytometry.
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5

BGMK Cell Culture and Immunofluorescence

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Baby green monkey kidney (BGMK) was obtained from the American Type Culture Collection (ATCC; Manassas, VA). BGMK cells were cultured in Dulbecco-modified Eagle’s medium (DMEM; HyClone, Ottawa, ON) with 7 % fetal bovine serum (FBS; HyClone), 2-mM L-glutamine, 100-U/mL penicillin, and 100-μg/mL streptomycin, at 37 °C with 5 % CO2. The following antibodies/probes were used during immunofluorescence: Lysotracker®DND-99 from Molecular Probes (Burlington, ON), the 9E10 mouse and mouse myc monoclonal antibody from Roche (dilution 1/100; Indianapolis, IN), rabbit anti-FLAG (dilution 1/100; Burlington, ON), and FITC/Cy3-conjugated goat anti-mouse or anti-rabbit immunoglobulin G (IgG) from Jackson ImmunoResearch Inc. (dilutions 1/100, 1/200 respectively; West Grove, PA, anti-CD63 antibody from Invitrogen (dilution 1/100; Burlington, ON); and MitoTRACKER Red FM from Molecular Probes (Burlington, ON). LITAF WT was synthesized by GenScript (Piscataway, NJ). Myc-tag was added to the N-terminus of the protein to facilitate imaging. PMP22 was synthesized by Sino Biological Inc. (BC019040, Beijing). The gene was pCMV/hygro and contained a flag-tag.
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6

Quantitative Analysis of Extracellular Vesicles

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Protein quantification was performed using Pierce BCA Protein Assay (Thermo Fisher Scientific, Rockford, IL, USA) according to the manufacturer’s recommended microplate assay procedure. Absorbance was measured with a Spectra Max M5 multimode microplate reader using Soft Max Pro data acquisition and analysis software (Molecular Devices, Sunnyvale, CA, USA). Vesicle isolates were denatured in 4X Laemmli sample buffer at 95°C for 10 min. Proteins were separated using 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis in Tris/Glycine/SDS running buffer and transferred to Immun-Blot PVDF membrane (all reagents and supplies from Bio-Rad, Hercules, CA, USA). Immunoblotting was performed with the anti-CD63 antibody (Invitrogen by Life technologies, Carlsbad, CA, USA). Primary antibody incubation time was 16 h at 4°C (overnight). Washing was done with PBST for three times, and further blots were washed with PBS and incubated with appropriate HRP-conjugated secondary antibody for 2 h at 4°C (A9917, Sigma-Aldrich, MO, USA). The 3, 3’ Diaminobenzidine (DAB) was used for developing the membrane. Densitometry analysis was performed on digitized images using Image J image processing and analysis software.
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