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6 protocols using ab110644

1

Western Blot Analysis of LPS-Induced Signaling

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Cells were inoculated in a 96-well plate at a concentration of 1x103/well. The cells were treated with LPS, as previously described, and then total protein was extracted from the cells using RIPA buffer (Auragene; Hunan Aijia Biotechnology Co., Ltd.). Protein quantities were determined using a BCA protein assay kit (Bio-Rad Laboratories, Inc.). Samples containing 40 µg protein/lane were separated by 10% SDS-PAGE and transferred onto PVDF membranes (EMD Millipore). Following blocking with 5% non-fat milk for 1 h at room temperature, the membranes were incubated with primary antibodies targeting TRADD (1:1,000; cat. no. ab110644; Abcam), p65 (1:1,000; cat. no. ab16502; Abcam), phosphorylated (p)-p65 (1:1,000; cat. no. ab183559; Abcam) and GAPDH (1:1,000; cat. no. ab9485; Abcam) overnight at 4˚C. Following washing with 0.1% PBS-Tween-20 four times, the membranes were incubated with horseradish peroxidase-conjugated secondary antibody (1:5,000; ab150113; Abcam) for 1 h at room temperature. Finally, the bands were visualized using an ECL detection system (Beyotime Institute of Biotechnology) and Image J software (version 146; National Institutes of Health) was used to analyze the fold-changes of protein levels.
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2

Immunostaining of A20, RIP1, TRADD

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Paraffin sections were fully deparaffinized and hydrated, and then washed and heated to 92-98 °C for antigen retrieval. Samples were incubated with primary antibodies against A20 (ab13597, Abcam), RIP1 (ab72139, Abcam), and TRADD (ab110644, Abcam) in blocking buffer overnight at 4 °C. Samples were subsequently incubated with the corresponding secondary antibody in blocking buffer at room temperature, and finally incubated with DAPI staining solution for 10 min. Images were obtained under a fluorescence microscope (Nikon, Japan).
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3

Western Blot Analysis of Signaling Proteins

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After lysing in RIPA buffer, the collected total protein was separated on 12% SDS-PAGE and shifted onto PVDF membranes. 5% nonfat milk powder was added for blocking membranes. Next, the membrane was probed all night at 4 ​°C with primary antibodies against loading control GAPDH (ab8245, 1/1000; Abcam, Cambridge, MA, USA), TRAP (ab65854, 1/1000; Abcam), NFATc1 (ab175134, 1/1000; Abcam), TRAF3 (ab36988, 1/1000; Abcam), TRAF1 (ab129279, 1/1000; Abcam), TRADD (ab110644, 1/1000; Abcam), TRAF2 (ab230795, 1/1000; Abcam), ADAM17 (ab39162, 1/1000; Abcam), TNFRII (ab8161, 1/1000; Abcam), TNFRSF1A (ab19139, 1/1000; Abcam), p-IKB (ab133462, 1/1000; Abcam), IKB (ab32518, 1/1000; Abcam), TNFRSF11 (NB100-56508, 1/1000; Novus Biologicals, Littleton, CO, USA), p-IKKα (ab38515, 1/1000; Abcam), IKKα (ab32041, 1/1000; Abcam), p-IKKβ (ab59195, 1/1000; Abcam), IKKβ (ab124957, 1/1000; Abcam), p-Erk (ab214036, 1/1000; Abcam), Erk (ab184699, 1/10000; Abcam), p-MEK (ab96379, 1/1000; Abcam), MEK (ab32091, 1/1000; Abcam). On the following day, the HRP-secondary antibodies were added for 2 ​h at room temperature. The protein density was examined by the ECL luminous liquid (Pierce, Rockford, IL, USA). The assay was taken in triplicate.
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4

Western Blot Analysis of Inflammatory Signaling

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Protein (60 µg) extracted from isolated rat intestinal epithelial cell samples was separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes. The membranes were then blocked with 5% skimmed milk in TBS-T for 1 h at room temperature and incubated with the following primary antibodies overnight at 4 °C: A20 (1:1000; ab13597, Abcam), TNF-α (1:1000; ab6671, Abcam), TNFR1 (1:5000; ab19139, Abcam), TRADD (1:500; ab110644, Abcam), RIP1 (1:500; ab72139, Abcam), FADD (1:400; ab24533, Abcam), and GAPDH (1:1500; 5174, CST). Following several sequential washes, the membranes were incubated with the corresponding secondary anti-mouse antibody (A0208, Beyotime) for 1 h at room temperature. Blots were then washed four times with TBS-T (10 min each time). The membranes were stained with ECL enhanced chemiluminescence solution and visualized using a visualizer.
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5

Investigating Necroptosis Signaling Pathways

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Abcam provided rabbit anti-MLKL (ab184718), rabbit anti-phospho-RIP3 (T231, S232) (ab222320), rabbit anti-phospho-MLKL (S345)(ab196436), rabbit anti-TNFR1 (ab68160), rabbit anti-TRADD (ab110644), and rabbit anti-CIAP2 (ab32059) antibodies. Rabbit anti-RIP1 (3493 s) and rabbit anti-IκBα (9242) antibodies were purchased from Cell Signaling Technology. The mouse anti-GAPDH (AC033) antibody was purchased from AbClonal. Sigma provided the rabbit anti-RIP3 (PRS2283) antibody. Santa Cruz Biotechnology offered mouse anti-β-actin (sc-47778) antibody. Calbiochem (San Diego, CA, USA) offered Benzyloxycarbonyl-Val-Ala-Asp-fluoromethylketone (ZVAD; 627610). Sigma-Aldrich offered propidium iodide (PI; P4170). Murine TNF-α (PMC3015) was purchased from Thermo Fisher. Ketamine (1707031) was obtained from Gutian Pharmaceutical Co. Ltd.
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6

Western Blot Analysis of TNF-α Signaling

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Protein extracted from mice by RIPA lysis buffer (Solarbio, China) was measured by BCA kit (Abcam, UK) to determine the protein concentration, followed by the separation of SDS-PAGE system (Bio-Rad, USA) and subsequently transferred to PVDF membrane (Millipore, Germany). Then, membrane was blocked by blocking buffer (Beyotime, China) at 4°C for 4 h, followed by the incubation with the primary antibodies of TNFα (ab183218, 1:1000), TNFR1 (Abcam, ab223352, 1:1000), TNFRSF1A Associated Via Death Domain (TRADD) (Abcam, ab110644, 1:1000), RIP (Abcam, ab202985, 1:1000), TNF Receptor Associated Factor 2 (TRAF2) (Abcam, ab244317, 0.4 μg/mL), p-Inhibitor of Nuclear Factor Kappa B Kinase Subunit Beta (p-IKKβ) (Cell Signaling, #2697, 1:1000), IKKβ (Cell Signaling, #8943, 1:1000), p-p65 (Cell Signaling, #3033, 1:1000), p65 (Cell Signaling, #8242, 1:1000), PAR2 (Abcam, ab180953, 1:10,000), PKC-γ (Abcam, ab71558, 1: 2000), PKA (Cell Signaling, #4782, 1:1000) and TRPV1 (Abcam, ab6166, 1:1000) for 12 h at 4°C. Following the incubation with the secondary antibody linked to HRP (Abcam, ab96899, 1:10,000) for 4 h at room temperature, protein was measured by ECL kit (Thermo Scientific, China) and Bio-Rad XR gel imaging analysis system (Bio-Rad, USA).
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