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101 protocols using rock inhibitor y 27632

1

Efficient iPSC Transfection and Expansion

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In total, 5 × 105 hFFn-iPSCs or mALK2-iPSCs were transfected with 2 μg pCXLE-eGFP (Addgene) using the Neon transfection system. Before dissociation with Accutase (Invitrogen), the iPSCs were pre-treated with 10 μM ROCK inhibitor Y-27632 (Sigma) for 3 h. After electroporation with pCXLE-eGFP under the condition 1200 V, 30 ms and 2 × pulses, the transfected cells were subsequently plated on feeder cells or Matrigel with 10 μM ROCK inhibitor Y-27632 for 24 h. The mTeSR1 media was freshly changed daily for 15 days.
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2

Episomal hiPSC Genome Editing

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The characterized Gibco (Cat no. A13777) episomal human induced pluripotent stem cell line was chosen as control line to conduct the genome editing. Cells were normally cultured in Matrigel (Crorning, cat no. 354277) coated plates using Essential 8 medium (Thermo Fisher, cat no. A1517001) with 1% Penicillin/Streptomycin (Invitrogen, cat no. 15140122). Cell splitting procedures were performed using Accutase (Sigma, cat no. A6964) and plated in the same culturing media, but containing ROCK inhibitor Y-27632 (Merck Milipore, cat no. 688000) at 10uM for 24 h after dissociation.
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3

iPSC Maintenance and Passaging

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iPSC were maintained on Matrigel coated dishes with NutriStem hESC XF medium (Biological Industries cat-# 05-100-1 A) supplemented with 1× sodium pyruvate and 0.05 mg/ml uridine. For passaging, cells were dissociated by TryplE express reagent and replated at a density of 1.5 × 104 cells/cm2 in NutriStem with 10 µM Rock inhibitor (Y-27632) (Millipore# SCM075). Media was replaced with Rock inhibitor free NutriStem after 24 hours.
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4

Generation and Maintenance of iPSCs

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The iPSC lines were generated from different anonymous adult donors by peripheral blood (PB) reprogramming using episomal vectors that express OCT4, SOX2, MYC, KLF4, and BCL-XL (37 (link),38 ,45 (link)). Blood samples were obtained from the Tianjin Blood Center with the approval of the local research ethics committee. All feeder-free iPSCs (passages 6–15) were routinely maintained on Matrigel (Corning)-coated tissue-culture plates (BD) in mTeSR1 (Stemcell Technologies) (46 (link),47 ). On the first day after passaging with Accutase (Stemcell Technologies), 10 μM ROCK inhibitor Y-27632 (Millipore) was added to the culture medium. Human iPSCs were cultured at 37°C with 5% CO2 and were fed with fresh medium every day.
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5

Mouse iPSC Generation and Maintenance

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Mouse iPSCs, gifted by Professor Budd A. Tucker at the University of Iowa, were generated through reprogramming fibroblasts of 6-week-old dsRed expressing transgenic mice (B6.Cg-Tg(ACTB-DsRed*MST)1Nagy/J; Jackson Laboratory) by an ecotropic retrovirus carrying the Yamanaka factors (OSKM: Oct-3/4, Sox2, Klf4, and c-Myc). Successfully reprogrammed cells were transferred into plates coated with 0.2% matrigel (Becton Dickinson) and maintained in DEME/F12 medium (Gibco) comprised of 15% FBS (Gibco), 1% nonessential amino acids (NEAA; Gibco), 1% L-glutamine (Gibco), 0.2% Primocin (Invivogen), 0.0008% β-Mercaptoethanol (β-ME; Sigma-Aldrich), and 0.02% fresh mouse leukemia inhibitory factor (mLIF; Millipore, Danvers, MA, USA). Then, 0.1% ROCK inhibitor Y-27632 (Millipore) was added for iPSC seeding, passaging, or cryopreserving. Cells were cultured at 5% CO2 and 37°C.
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6

Lung Cell Culture and Colony Assay

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Cell culture inserts for 24-well plates (pore size of 0.4 µm; Corning, Corning, NY, USA) were coated with 50 µL of growth factor–reduced Matrigel (Corning) before cell seeding. After sorting, cells were isolated by centrifugation and suspended in lung cell medium (LCM) consisting of Dulbecco’s modified Eagle’s medium (DMEM)–nutrient mixture F-12 (Wako, Osaka, Japan) supplemented with B-27 (Thermo Fisher Scientific, Waltham, MA, USA), 15 mM HEPES (Thermo Fisher Scientific), as well as recombinant murine EGF (40 ng/mL, Peprotech, Cranbury, NJ, USA), recombinant murine KGF (20 ng/mL, Peprotech), and 10 µM of the ROCK inhibitor Y-27632 (Millipore, Burlington, MA, USA). The cells were then seeded at a density of 1 × 105 cells/mL in 200 µL on each insert of a 24-well plate, 400 µL of LCM were added to the bottom of each well, and the medium in both chambers was replaced every 2 to 3 days. Colonies were observed and were counted after 10 days with the use of a BZ-9000 microscope (Keyence, Osaka, Japan).
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7

Hepatocyte Differentiation of iPSCs

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Induced pluripotent stem cells (iPSCs) were differentiated into hepatocytes according to the previously published protocol35 (link). In brief, cells were seeded into growth factor-reduced Matrigel-coated 6-well plates (2 million cells per well) in STEMdiff definitive endoderm basal medium (StemCell Technologies) containing Supplements A and B and cultivated for one day. From day 2 to 4, medium was exchanged daily and only contained Supplement B. At day 5, cells were detached and re-seeded into 96-well plates with a density of 12,000 cells per well. Medium was changed to Differentiation medium for hepatic specification: High-glucose DMEM/F12 (Gibco); 10% KOSR (Gibco); 1% Glutamin (Gibco); 1% Non-essential amino acids (Gibco); 1% Pen/Strep (Gibco); 100 ng/ml Human Growth Factor (peprotech); 1% DMSO; 10 µM Rock inhibitor Y27632 (Millipore).
From day 7 to 13, medium was changed to Differentiation medium without Rock inhibitor and refreshed daily. At day 14, medium was changed to Cultivation medium, which contained 10−7 M Dexamethasone (Sigma Aldrich) instead of Human Growth Factor and DMSO. This medium was also changed daily and used during treatments and further analysis.
To assess the level of iPSC differentiation into hepatocytes, expression levels of markers were analyzed on mRNA level by qRT-PCR: ALB, ABCC2, CYP1A1, HNF4A and RXRA.
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8

Mouse iPSCs Differentiation and Labeling

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Mouse iPSCs were maintained in DMEM/F12 medium (Gibco) comprised of 15% FBS (Gibco), 1% non-essential amino acids (NEAA; Gibco), 1% L-glutamine (Gibco), 0.2% Primocin (Invivogen, San Diego, CA), 0.0008% β-Mercaptoethanol (β-ME; Sigma-Aldrich), and 0.02% fresh mouse Leukemia Inhibitory Factor (mLIF; Millipore, Billerica, MA, USA). 0.1% ROCK inhibitor Y-27632 (Millipore) was added for iPSC seeding, passaging, or cryo-preserving. Conditioned medium of HTM cells of donors 1 to 3 were collected, pooled, sterilized through mixed cellulose ester membrane filters (0.2 µm pore size; Millipore) and applied for mouse iPSCs differentiation for 14 days. As we described earlier,15 (link) differentiated cells were then purified through a magnetic bead-based approach that exploits the SSEA-1 expression of undifferentiated cells, designated as miPSC-TM, and used for PSC NP-labeling experiments and intracameral injection. The use of mouse iPSCs and its derivatives were approved by the ethics committee of Qingdao University following the use guidelines of Medical College of Qingdao University.
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9

Efficient TALEN-mediated Kat2b knockdown in hESCs

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We knocked down Kat2b in hESCs by TALEN. CAG-GFP fragment was replaced by U6 promoter and shRNA sequence from AAV-CAGGS-EGFP (Addgene, Cambridge, MA, USA). The shRNA targeting sequences were: shKat2b#1 (5′-CGAACTCTAATCCTCACTCAT-3′), shKat2b#2 (5′-CCAGCCAGCTAGGCATCCAAA-3′), shKat2b#3 (5′-GGAAGCTGGATTAATTGACAA-3′). Before electroporation, hESCs were cultured in ROCK-inhibitor Y-27632 (Millipore, Hayward, CA, USA, 688002) for 3 h. About 1 × 107 cells were mixed with 5 μg of each TALEN targeting AAVS1 locus.32 (link) And 40 μg of AAVS1-SA-PURO-PA-U6 promoter-shRNA-PA donor after trypsin/EDTA solution treatment and then electroporated (Gene Pulser Xcell System, Bio-Rad: 250 V, 500 μ F, 0.4 cm cuvettes). Transfected cells were plated on MEF with ROCK-inhibitor for the first 24 h. Then we used 1 μg/ml puromycin (Sigma, St. Louis, MO, USA, P8833) to select cells cultured with MEF-conditioned medium. Individual colonies were picked up after about 15 days and identified by PCR using primers for homologous recombination forward: 5′-CTTCCGCATTGGAGTCGCTTTA-3′ and reverse: 5′-ACAGGAGGTGGGGGTTAGAC-3′ or wild type forward: 5′-CAGCCGGTCCTGGACTTTGTC-3′ and reverse: 5′-AGCCGGGAACCGCTCAACTC-3′.
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10

Embryoid Body Formation and Differentiation

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Confluent cell cultures were detached as small cell clumps and plated onto ultra-low adhesion plates (Corning, USA) with Nutristem hPSC XF Medium, GF-free (Biological Industries) containing 10 μM ROCK inhibitor Y-27632 (Millipore, USA) for the first 24 h with subsequent media changes every 2–3 days. After 2 weeks in ultra-low adhesion plates, the embryoid bodies were plated for an additional 2 weeks onto LN521 coated glass chamber slides (Corning). After a total culture of 4 weeks, the cells were fixed with 4% formaldehyde (Sigma-Aldrich, USA).
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