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6 protocols using igg isotype control antibody

1

Tau Immunoprecipitation from Diverse Samples

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From HEK293T lysates, SEC fraction 9 from PS19 mice, and AD and PSP human samples, tau was immunoprecipitated by using 2 µg of biotinylated HT7 antibody (Thermo Fisher, MN1000b), for every 100 ng of human tau quantified by ELISA. IgG isotype control antibodies (BioLegend, 400104) were used for comparison. The IP and flow-through samples were then subjected to further analysis.
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2

Multicolor Flow Cytometry of Immune Cells

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The samples were washed with PBS containing 2% FBS and centrifuged at 300 × g, 4°C for 5 minutes. Dead cells were stained with APC-Cy7-conjugated Zombie NIR (BioLegend, #423105), and the cells were subsequently stained with the following surface markers for 30 minutes at 4°C: Alexa Fluor 647-conjugated anti-human CD45 antibody (BioLegend), FITC-conjugated anti-human CD14 antibody (BioLegend, #301803, RRID:AB_314185), and PE-conjugated anti-human CD163 antibody (BioLegend). As the controls, IgG-isotype control antibodies (BioLegend, #400112) were used. Cells were analyzed by flow cytometry (FACS Array, Becton Dickinson), and data were reanalyzed with Flow Jo software (Tree Star).
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3

CD4+ T Cell Depletion Model

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Experimental animals were depleted of CD4+ cells using a rat anti-mouse CD4 monoclonal IgG2b antibody (clone GK1.5; BioLegend, San Diego, CA, USA). The antibody was administered i.p. (300 μg per mouse) 24 h before ConA administration. Control animals were treated with IgG isotype control antibodies (BioLegend).
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4

TIM3 Pathway Modulation in THP-1 Cells

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The TIM3 pathway was interfered with by TIM3 blocking antibody, with the THP-1 cells being incubated with 10 μg/mL of TIM3 blocking antibody (#345004, BioLegend, San Diego, CA, USA) or IgG isotype control antibody (#400153, BioLegend, San Diego, CA, USA) for 24 h. Then, the CLEC7A, CCL13, and IL-6 mRNA levels were measured by RT-qPCR or ELISA.
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5

SLAMF5 Stimulation of Dendritic Cells

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For SLAMF5 stimulation moDCs adjusted to 107 ml−1 were suspended in complete RPMI-1640 medium containing 10 µg ml−1 anti-SLAMF5 antibody (clone 152-1D5; LifeSpan BioSciences, Cat. No. LS-C134663) or an IgG isotype control antibody (BioLegend, Cat. No. 400124) at 4°C for 45 min. Thereafter, following thorough washing procedures, cells were reseeded into 24-well cell culture plates and incubated in complete medium in the presence of 10 µg ml−1 F(ab′)2 of goat anti-mouse IgG (Jackson ImmunoResearch Laboratories, Cat. No. 115-006-062) at 37°C for 2 h.
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6

Characterization of Phagocytic Cell Lines

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PC12 cells and MG6 cells27 (link)28 (link) were obtained from RIKEN BRC, Japan. PC12 cells were maintained in DMEM (Nakarai, Japan) supplemented with 10% FBS (Biowest) and 10% horse serum (Life technologies), and MG6 cells were maintained in DMEM supplemented with 10% FBS, 10 μg/ml insulin and 100 μM 2-mercaptoethanol. Recombinant rat beta-NGF and pan-caspase OPH inhibitor Q-VD26 (link) were from R&D systems. Monoclonal antibody against C3a/C3 (clone K13/16) and IgG isotype control antibody were from BioLegend. The NIH3T3 transformants expressing Tim4 (3T3/Tim4) and rD89E were described previously31 (link)32 (link). When indicated, membranes of MG6 cells or exosomes were labelled with PKH26 red fluorescent cell linker kit (Sigma) according to the manufacturer's instructions.
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