The largest database of trusted experimental protocols

14 protocols using mouse anti pcna

1

Overexpression and knockdown of IDH1

Check if the same lab product or an alternative is used in the 5 most similar protocols
pLKO.1-shIDH1 plasmids were obtained from Sigma-Aldrich. The TCRN are as follows: shIDH1 #1: TRCN0000027253; shIDH1 #2: TRCN0000027249 (Fig. S1B). To overexpress IDH1, the IDH1 ORF was cloned into the pBABE-puro backbone. The following antibodies were obtained from the indicated suppliers: rabbit anti-IDH1 (Cell Signaling), rabbit anti-Lamin B1 (Abcam), rabbit anti-Cyclin A (Abcam), mouse anti-PCNA (Cell Signaling), mouse anti-MCM3 (Santa Cruz Biotechnologies), mouse anti-Vinculin (Sigma-Aldrich), mouse anti-Beta Actin (Sigma-Aldrich), rat anti-BrdU (Abcam), mouse anti-PML (Santa Cruz Biotechnologies), mouse anti-γH2AX (EMD Millipore), rabbit anti-53BP1 (Bethyl), Fluorescein donkey anti-rat IgG (Jackson ImmunoResearch), Cy™3 donkey anti-mouse (Jackson ImmunoResearch).
+ Open protocol
+ Expand
2

Quantitative Immunoblotting for Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell extracts were isolated using a lysis buffer (20 mM Tris-HCl pH 8.0, 400 mM NaCl, 5 mM EDTA, 1 mM EDTA, 1 mM Na pyrophosphate, 1% Triton X-100, 10% glycerol). Proteins were fractionated by SDS-PAGE (12% gel) and transferred onto PVDF membranes (Amersham). After incubation with nonfat milk in Tris-buffered saline with Tween 20 (TBST) for 60 min, the membrane was washed once with TBST. Primary antibodies used in immunoblot experiments were as follows: goat anti-α-tubulin (1 : 1000, Abcam), mouse anti-Sox2 (1 : 1000, Millipore), mouse anti-Cyclin D (1 : 1000), mouse anti-Cyclin B, (1 : 1000), mouse anti-PCNA, (1 : 1000), and mouse anti-p21 (1 : 500) were all purchased from Cell Signaling Technology. Secondary antibodies (anti-goat, anti-mouse) conjugated with horseradish peroxidase were used (Santa Cruz Biotechnology). Reactions were developed by the enhanced chemiluminescence (ECL) procedure using luminol and coumaric acid as substrates and exposed on a Hyperfilm ECL (Amersham). Immunoblot images were quantitated using ImageJ software (NIH).
+ Open protocol
+ Expand
3

Histopathological Analysis of Liver Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The livers were harvested and fixed in 4% paraformaldehyde for at least 24 hours. Liver samples, embedded in paraffin, were cut into 5-μm-thick sections. Liver tissue sections were stained with hematoxylin-eosin (H&E) using standard procedures. For immunohistochemistry, sections were rehydrated and processed for an antigen-unmasking procedure, then incubated with primary antibodies overnight at 4 °C, followed by horseradish peroxidase-conjudated secondary antibodies. For all tissues, sections were counterstained with hematoxylin. Six to ten images from random fields in each section were taken with a light microscope (Axio Imager A1; Zeiss), and at least three mice per group were subjected to each experiment. Image-Pro Plus 6.0 was used for image analysis of sections. The primary antibodies used were goat anti-OPN (R&D Systems, Minneapolis, MN), mouse anti-BrdU, mouse anti-PCNA (Cell Signaling, Boston, MA), rabbit anti-MPO (BioCare Medical, Concord, CA), and rat anti-F4/80 (AbD Serotec, Oxford, UK).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Embryonic and Postnatal Mouse Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
Embryos were dissected, and the brains were fixed in 4% paraformaldehyde (PFA) for 1–3.5 hr. For postnatal stage, brains were fixed with 4%PFA overnight. Following 30% sucrose replacement, fixed brains were embedded in optimum cutting temperature (OCT) compound, and 20 micrometer slices were cut on a cryostat. The antibodies used were, rat anti-GFP (1∶500; nakalai tesk), rabbit anti-GFP (1∶200; IBL), rabbit anti-DsRed (1∶500; Invitrogen), goat anti-Unc5D (1∶100; R&D), rabbit anti-Tbr2 (1∶300; abcam), goat anti-NeuroD1 (1∶100; Santa Cruz), mouse anti-PCNA (1∶100; Cell Signaling), mouse anti-Tuj1 (1∶500; SIGMA), rabbit anti-Tbr1 (1∶100; abcam), mouse anti-RORb (1∶100; PERSEUS PROTEOMICS), rat anti-Ctip2 (1∶300; abcam), goat anti-Brn2 (1∶100; Santa Cruz), and mouse anti-Prdm8 [24] (link). Alexa Fluor-conjugated secondary antibodies (Invitrogen) were also used. EdU labeling (intraperitoneal injection of 12.5 mg/kg EdU) and staining were performed according to manufacturer's instructions (Invitrogen). Stainings were examined with Zeiss LSM 710 or Olympus IX81, and the images were finally processed with Adobe Photoshop.
+ Open protocol
+ Expand
5

Immunohistochemical Profiling of Liver Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Frozen liver sections (5-μm thick) and cells were fixed. Nonspecific antibody binding was blocked by 5% goat serum and 0.5% Triton X-100 in PBS. After aspirating away the blocking buffer, cells were incubated with mouse anti-PCNA, rabbit anti-desmin (Cell Signaling, Boston, MA), goat anti-OPN (R&D Systems), rabbit anti-CK19 (Proteintech, Chicago, IL), or rat anti-F4/80 (AbD Serotec) antibody diluted in PBS containing 1% bovine serum albumin and 0.5% Triton X-100 overnight at 4 °C. After washing in PBS, cells were incubated with fluorescence-conjugated secondary antibodies at room temperature for 1 hour. DAPI was used to stain cell nuclei. Six to ten images were acquired for each sample and the percentage of positive nuclei was calculated.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of Human Xenograft Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fresh frozen cryostat sections of human xenografted A204 tumors were stained as described previously.25 (link) Briefly, cryostat sections were fixed with periodate-lysine-paraformaldehyde and blocked with donkey serum (1:20) for 30 min at room temperature (RT). Slides were then incubated with rabbit anti-p-HP1γ (1:80; Abcam, UK), mouse-anti-PCNA (1:50; Cell Signaling Technology, MA), mouse anti-p16INK4a (1:50; Santa Cruz Biotechnology, Germany), or rabbit anti-Ki67 (1:100; Abcam, USA) for 1 h at RT. After 3 washes, the sections were incubated with Cy3- or Cy5-conjugated donkey anti-rabbit antibody and Cy3- or Cy5-conjugated donkey anti-mouse antibody (all from Dianova, Germany). Nuclei were stained with Yopro (1:2000; Invitrogen, Germany) for 5 min before mounting the slides with Mowiol (Hoechst, Germany). The sections were analyzed with a Leica TCS-Sp/Leica DM RB confocal laser scanning microscope (Leica Microsystems, Germany). Images were processed with the Leica Confocal Software LCS (Version 2.61).
+ Open protocol
+ Expand
7

Immunohistochemical Analysis of Matrix Metalloproteinases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Endogenous peroxidase was quenched using 3% hydrogen peroxide and nonspecific binding was blocked using 2% bovine serum albumin (BSA) for 1 h. Tissue sections were incubated overnight at 4°C with either goat anti-MMP-9 (1:200, Santa Cruz, USA), mouse anti-MMP-2 (1:200, Santa Cruz, USA), or mouse anti-MT1-MMP (1:400, Santa Cruz, USA) antibodies. To detect cerebral microvascular EC or neural proliferation, sections were incubated with mouse anti-PCNA (1:1400, Cell Signaling Technology) or rabbit anti-vWF (von Willebrand factor; 1:400, Dako, Denmark) for 1 h at 37°C. Subsequently, sections were incubated with biotinylated anti-mouse IgG (1:800, Santa Cruz) or anti-goat IgG (1:800, Santa Cruz) secondary antibodies for 1 h at 37°C followed by the avidin-biotin-peroxidase complex (1:100, Vector Laboratories, USA). Immunoreactivity was detected with diaminobenzidine (Boster Biotech Co., P.R. China).
+ Open protocol
+ Expand
8

Immunohistochemical Analysis of Cerebral Microvascular Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the immunohistochemical analysis, sections were incubated with mouse anti-VEGF (1 : 200, Abcam) or mouse anti-HIF-1α (1 : 200, Novus), and then with biotinylated anti-mouse IgG (1 : 800, Santa Cruz) for 1 h at 37°C. The samples were then incubated with an avidin-biotin-peroxidase complex (1 : 100, Vector Laboratories) for 1 h at 37°C. Immunoreactivity was visualized with DAB.
To detect proliferating cerebral microvascular endothelial cells, the sections were incubated with mouse anti-PCNA (1 : 1400, Cell Signaling Technology) and rabbit anti-vWF (1 : 400, Dakon) for 1 h at 37°C. The following secondary antibodies were then used: fluorescein 488-conjugated anti-rabbit antibody (1 : 1000, Jackson ImmunoResearch) and Cy3-conjugated anti-mouse antibody (1 : 1000, Jackson ImmunoResearch). After washing with PBS, the sections were stained with DAPI for 2 min to reveal the location of the nucleus. PCNA+/vWF+ nuclei close to the hematoma were counted. The data were presented as the number of nuclei per mm2 (N/mm2). To determine whether VEGF and HIF-1α were expressed in the endothelial cells , tissue sections were incubated with mouse anti-VEGF (1 : 200, Abcam) or mouse anti-HIF-1a (1 : 100, Novus) with rabbit anti-vWF (1 : 400, Dakon).
+ Open protocol
+ Expand
9

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIPA buffer (0.1% SDS, 150 mM NaCl, 1.0% Triton X-100, 10 mM Tris, 5 mM EDTA pH 8.0) with a protease and phosphatase inhibitor cocktail (Roche Applied Science, Indianapolis, IN, USA) was used to obtain the cell lysates. The Bradford assay was used to evaluate the protein concentration in each sample. Proteins (25 μg) were analyzed by SDS-PAGE, and then transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA, USA). A blocking buffer (Bio-Rad, Hercules, CA, USA) was used to block the membrane that was then incubated overnight with primary antibodies.
Mouse anti-phospho-p38 (Cell Signaling), rabbit anti-phospho-NF-kB (Cell Signaling), mouse anti-PCNA (Cell Signaling) and mouse anti-β-actin (Cell Signaling) were used as primary antibodies.
We used secondary horseradish peroxidase-conjugated antibodies (anti-mouse or anti-rabbit) (The Jackson laboratory, Bar Harbor, ME, USA). A Uvitec Imager (UVItec, Cambridge, UK) was used to visualize the protein bands by using the Clarity ECL chemiluminescence substrate (Bio-Rad) that were then quantified using ImageJ software. Each measure was normalized with respect to β-actin.
+ Open protocol
+ Expand
10

Investigating CD8+ T cell proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used for immunohistochemistry and western blot included rabbit anti-CD8(+) (RM-9116-S1, Thermo Fisher Scientific, Cheshire, UK), rabbit anti-CCL5 (ab9679, Abcam, Cambridge, UK), mouse anti-PCNA (2586, Cell Signaling Technology, MA, USA), rabbit anti-GAPDH (2118, Cell Signaling Technology, MA, USA), mouse anti-β-ACTIN (3700, Cell Signaling Technology, MA, USA), rabbit anti-STAT5 (9363, Cell Signaling Technology, MA, USA), rabbit anti-phospho-STAT5 (9314, Cell Signaling Technology, MA, USA) and rabbit anti-CCND1 (2978, Cell Signaling Technology, MA, USA). The reagents used in the in vitro experiment included recombinant human CCL5 (rhCCL5), anti-CCL5 neutralizing antibody and Pimozide were purchased from R&D systems (278-RN, MAB678, 0937 Minneapolis, MN, USA). rhCCL5 was reconstituted in phosphate buffered saline (PBS) and adjusted to a final concentration of 2, 20, 100 ng/ml. For blocking the proliferation effect of rhCCL5 and conditioned media, the anti-CCL5 neutralizing antibody was reconstituted in PBS and adjusted to a final concentration of 2 μg/ml. The STAT5 inhibitor Pimozide was used for interruption assay at a final concentration of 10 μM (dissolved in DMSO). All reagents were used in a low androgen condition to evaluate the proliferation effect and the mechanism dissection of CD8+ T cells or rhCCL5 on BECs.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!