The largest database of trusted experimental protocols

8 protocols using anti h3p

1

Whole-mount Immunostaining of Synapsin and H3p

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount immunostaining was performed as previously described [58 (link)]. In each experiment, ten animals were used in each group. Animals were killed in PBS with 5% NAC for 5 min and washed three times with PBST at room temperature. Then, the animals were fixed in 4% paraformaldehyde for 2–4 h at 4 °C and incubated in 100% methanol for 1 h at −20 °C. Thereafter, the animals were blocked with 10% goat serum in PBST for 2–4 h at 4 °C and incubated with primary anti-synapsin (1:100; Developmental Studies Hybridoma Bank, Shanghai, China) or anti-H3p (1:250; Millipore, 05-817R, MA, USA) antibodies overnight at 4 °C. After six times of washing with PBST, the animals were labeled with goat anti-mouse Alexa Fluor 488 (1:500; Invitrogen, 673781, Shanghai, China) or goat anti-rabbit Alexa Fluor 568 (1:500; Invitrogen, 11036). Finally, the animals were observed by NIS element software (version 4.2.0, Olympus, IX73P1F, Tokyo, Japan).
+ Open protocol
+ Expand
2

Whole-Mount In Situ Hybridization and Immunohistochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Colorimetric and FISHs were performed as previously described (Pearson et al., 2009 (link); King and Newmark, 2013 (link)). Following fluorescent or NBT/BCIP development, animals were incubated with anti-acetylated-Tubulin antibody (1:1000, Cell Signaling, Danvers, MA), anti-H3P (1:1000, Millipore), or a rabbit antiserum recognized unknown epitope to visualize the lumen of PT (1:500). Primary antibodies were detected with either Alexa-conjugated anti-rabbit antibodies (1:1000; Abcam) or HRP-conjugated anti-rabbit antibodies (1:1000; Jackson ImmunoResearch). NBT/BCIP developed whole-mount in situ specimens were mounted in mounting media containing 75% glycerol and 2 M urea. Fluorescent whole-mount in situ specimens were mounted in modified ScaleA2 containing 20% glycerol, 2.5% DABCO and 4 M urea (Hama et al., 2011 (link)). For cryosectioning, fluorescently stained whole-mounted animals were fixed overnight in 4% paraformaldehyde (in PBS) at 4°C, washed three times in PBS, equilibrated in 30% sucrose, frozen in OCT, and cryosectioned (10–20 μm).
+ Open protocol
+ Expand
3

Whole-mount Immunostaining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount immunostaining was performed as previously described [52 (link)]. In brief, the animals were killed with 5% NAC in phosphate-buffered saline (PBS) for 6 min at room temperature and washed four times with PBS containing 0.1% TritonX-100 (PBST). Then, the animals were fixed in PBST containing 4% paraformaldehyde. Next, the animals were blocked with 10% goat serum in PBST for 2 to 4 h at 4 °C and incubated with primary anti-H3P (1:500; Millipore, Burlington, MA, USA, 05-817R) or anti-synapsin (1:100–1:500 Developmental Studies Hybridoma Bank) antibodies overnight. The secondary antibodies include goat anti-rabbit Alexa Fluor 568 (1:500; Invitrogen, Waltham, MA, USA, 11036) for anti-H3P, and goat anti-mouse Alexa Fluor 488 (1:500; Invitrogen, 673781) for anti-synapsin. Digital pictures were collected using NIS element software (version 4.2.0, Nikon, Tokyo, Japan).
+ Open protocol
+ Expand
4

Immunohistochemistry of Flatworm Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry was performed after either paraformaldehyde of Carnoy fixative based fixation64 (link). Antibodies used were: anti-H3P (phosphorylated serine 10 on histone H3; Millipore; 09–797; 1:1000 dilution), anti-VC1 (kindly provided by Prof. Hidefumi Orii (check title); 1:10,000 dilution), anti-SMEDWI-1 (kindly provided by Prof. Jochen Rink; 1:500 dilution), anti-SYNORF-1 (3C11; Developmental Studies Hybridoma Bank; 1:50 dilution), anti-acetylated tubulin (Developmental Studies Hybridoma Bank; 1:200 dilution).
+ Open protocol
+ Expand
5

Whole-mount Immunostaining of Synaptic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount immunostaining was performed as previously described [52 (link)]. The animals were killed with 5% NAC in phosphate-buffered saline (PBS) for 5 min at room temperature and washed four times with PBS containing 0.1% TritonX-100 (PBST). The animals were then fixed in PBST containing 4% paraformaldehyde, and cold 100% MeOH for 1 h. Next, animals were blocked with 10% goat serum in PBST for 2 to 4 h at 4 °C and incubated with primary anti-synapsin (1:100–1:500 Developmental Studies Hybridoma Bank) or anti-H3P (1:500; Millipore, Burlington, MA, USA, 05-817R) antibodies overnight. The secondary antibodies include goat anti-rabbit Alexa Fluor 568 (1:500; Invitrogen, Waltham, MA, USA, 11036) for anti-H3P, and goat anti-mouse Alexa Fluor 488 (1:500; Invitrogen, 673781) for anti-synapsin. Digital pictures were collected using NIS element software (Nikon, Tokyo, Japan).
+ Open protocol
+ Expand
6

Whole-mount In Situ Hybridization and TUNEL Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount colorimetric and fluorescent in situ hybridizations were performed using a detailed protocol as previously described (King and Newmark, 2013 (link); Pearson et al., 2009 (link)). Fluorescence-labeled animals were mounted in ScaleA2 solution (Hama et al., 2011 (link)). Immunostaining with anti-H3P (1:1000, Millipore, Billerica, MA) was performed following fluorescent in situ development and was detected using Alexa-conjugated secondary antibody (1:1000, Abcam, Cambridge, MA). Animals were fixed and stained for TUNEL using a method previously described (Pellettieri et al., 2010 (link)) with modifications: animals were bleached in 0.075% ammonia and 3% hydrogen peroxide and treated with ProteinaseK (2 μg/ml) in PBSTx (0.3% Triton) for 10 min followed by 4% formaldehyde incubation for 10 min prior to TdT reaction.
+ Open protocol
+ Expand
7

Phosphorylated Histone H3 Immunofluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals were killed in 2% HCl and placed on ice for 30 seconds, then transferred to Carnoy’s fixative (60% ethanol, 30% chloroform, 10% glacial acetic acid) for 5 minutes at room temperature then 2 hours on ice. Bleaching was performed as for BrdU immunofluorescence, followed by treatment with 2 μg/ml proteinase K in PBSTx with 0.1% SDS. Animals were blocked 1–2 hours in PBSTx containing 10% horse serum, then labeled with anti-H3P (1:100, Millipore) in block overnight at 4°C. After PBSTx washes and blocking as described above, samples were labeled with goat anti-rabbit-HRP secondary antibody (1:100, Invitrogen) in block overnight at 4°C. Samples were developed with rhodamine tyramide in PBSTi containing hydrogen peroxide as described for BrdU immunofluorescence, and stained with DAPI prior to mounting. H3P immunofluorescence protocol was adapted from previous work (Newmark and Sánchez Alvarado, 2000 (link); Wenemoser and Reddien, 2010 (link)).
+ Open protocol
+ Expand
8

Detecting mRNA Expression via FISH

Check if the same lab product or an alternative is used in the 5 most similar protocols
All fluorescence in situ hybridisation (FISH) experiments are performed against a particular mRNA of interest, thereby allow detection of the mRNA expression. FISH was performed as described in King and Newmark, 2013 (link) and previously reported sequences were used for riboprobe synthesis of smedwi-1 (Abnave et al., 2017 (link)). The antibodies used for immunostaining were anti-H3P (phosphorylated serine 10 on histone H3; Millipore; 09–797; 1:1000 dilution Abnave et al., 2017 (link)), anti-poly (ADP) ribose (Shibata et al., 2016 (link)) (PAR) monoclonal antibody (1:250) (Santacruz, clone 10H), and anti-TUD1 (1:250 dilution, based on Solana et al., 2009 (link)). Anti-rabbit-HRP (H3P and TUD-1) and anti-mouse-HRP (PAR) (1:2000 dilution) secondary antibodies were used followed by tyramide signal amplification for FISH and immunostaining as described in King and Newmark, 2013 (link).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!