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Inverted microscope

Manufactured by Thermo Fisher Scientific
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The Inverted microscope is a type of optical microscope that is designed with the objective lens and the condenser positioned below the specimen stage, while the eyepiece is located above the stage. This configuration allows for the observation of specimens that are not suitable for examination with a traditional upright microscope, such as cell cultures, living organisms, and other samples that require an inverted orientation.

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22 protocols using inverted microscope

1

Hypoxia-Reoxygenation Injury Model for ECs

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The H/R-induced EC injury model was produced as we previously described [24 (link)]. Briefly, the ECs were cultured to 80% confluence in diverse culture dishes, and then they were cultured for 24 h in a hypoxia incubator (Thermo Fisher Scientific, USA) that was equilibrated with 1% O2, 5% CO2, and 94% N2. After that, the cells were preoxygenated by incubation in a standard cell incubator for 24 h. During the reoxygenation time, ECs were cocultured with culture medium (vehicle) or various groups of EXs. ECs cultured with culture medium under normoxic condition were used as controls. Morphological changes of H/R-injured ECs following MSC-EX, MSC-EXmiR-126, and MSC-EXSimiR-126 treatment were observed by an inverted microscope (Life Technologies, USA).
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2

In Vitro Angiogenesis Assay

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Matrigel Matrix 356237 (Corning Inc., Life Sciences, MA) was coated on 15-well μ-angiogenesis slides at 10 μL/well (ibidi GmbH, Planegg, Germany). The coated slides were incubated for 15 minutes at 37°C. Treated HUVECs (10,000 cells/well) were harvested and seeded into the Matrigel-containing wells and incubated for 6 hours at 37°C to allow tube formation. The wells were then imaged for capillary-like structures using an inverted microscope (Life Technologies). Quantification of the tubes was performed by taking 4 images of each chamber, which were then analyzed by ImageJ for in vitro angiogenesis [33 (link)].
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3

Characterization of Mesenchymal Stem Cells

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The surface marker of MSCs (P3-P6) was identified by flow cytometry, using antibodies against CD44 (BD Biosciences), CD34 (BD Biosciences), CD29 (BD Biosciences), and CD45 (BD Biosciences). For osteogenic differentiation, MSCs from passage 3 were seeded in 6-well plates and cultured with MEM medium (100 nM dexamethasone, 0.05 μM ascorbate-2-phosphate, 10 mM β-glycerophosphate, 100 U/mL penicillin, 100 μg/mL streptomycin, and 10% FBS, Invitrogen), and the cells were incubated in this medium for 3 weeks; osteogenic differentiation was assessed via staining with Alizarin Red (Sigma). The morphology of MSCs was also observed under an inverted microscope (Life Technologies, USA).
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4

Organoid Formation and Quantification

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COLON MAP samples that successfully formed organoids were dissociated and counted using a Bio-RAD TC20 automated cell counter and plated at 1,000 cells/well in 5 μL Matrigel domes in a 96-well plate. Organoids were imaged and counted using an inverted microscope (Fisherbrand) after 8 days in culture. Patient IDs were matched to histopathology results after compilation and tabulation of results. GraphPad Prism 9 was used for plotting and statistical analysis using unpaired t-tests.
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5

Measuring Ciliary Beat Frequency in Airway Epithelial Cells

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HSNE cultures were visualized on an inverted microscope (Fisher Scientific, Pittsburgh, PA) using a 20× objective lens. A high-speed monochromatic digital video camera (Model A602f-2; Basler AG, Ahrensburg, Germany) was used to record data at a sampling rate of 100 frames/s. Images were analyzed with Sisson-Ammons Video Analysis (SAVA, version 2.0.8 W) system.5 (link),32 (link),33 ,35 (link)–37 (link) Using the inverted microscope, large regions of beating cilia were identified within HSNE ALI cultures for each experiment. Captured images were then analyzed for CBF with virtual instrumentation software. Prior to apical fluid application to cell monolayers (addition of apical fluid stimulates CBF), baseline recordings of CBF were performed in both control and hypoxia-exposed cultures for 5 minutes. After baseline CBF measurement, a solution consisting of 100 μL of phosphate-buffered saline (PBS) and 20 μmol/L forskolin was added and stimulated CBF was recorded for another 15 minutes and compared with vehicle control.
Reported CBFs represent the arithmetic means of all data points. All experiments were carried out at room temperature (23°C).
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6

Candida Filamentation Assays in Liquid and Solid Media

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Filamentation in liquid medium was assayed at 37°C in RPMI 1640 supplemented with l-glutamine (Cellgro, Manassas, VA) and buffered with 165 mM 3-morpholinopropanesulfonic acid (Sigma, St. Louis, MO) to pH 7.0 (“buffered RPMI 1640”). In brief, buffered RPMI 1640 with or without DOX was inoculated with cells from overnight cultures at a final density of 5 × 106 cells/ml, followed by incubation at 37°C with shaking at 200 rpm. Cells were visualized by DIC microscopy after 24 h by using a Zeiss EC Plan-NeoFluar 63×/1.25× oil objective (Carl Zeiss AG, Jena, Germany).
Filamentation was assayed on solid YPD with 10% (vol/vol) fetal calf serum (FCS), Medium 199 supplemented with l-glutamine (M199), and Spider medium, as described previously (24 (link)). YPD agar was used for embedded colony observation as described previously (32 (link)). All plates were prepared with and without 20 μg/ml doxycycline. Aliquots of 3 μl of cells from overnight cultures were spotted onto agar plates and incubated at 37°C for 24 h. For embedded colony observation, molten YPD agar was cooled to approximately 45°C and cells from overnight cultures were added to a concentration of 20 cells/ml, poured into individual petri dishes, and incubated for 24 h at 30°C. Filamentation was observed with an inverted microscope (Fisher Scientific, Waltham, MA) at 100× and 400× total magnification.
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7

Histological Evaluation of Tumor Tissue

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As previously described [17 (link)], terminal tumor tissue was stored in a 10% neutral buffered formalin for fixation and subsequent paraffin embedment. Formalin-fixed paraffin-embedded tumors were sectioned and stained with hematoxylin (Vector Laboratories, Newark, CA, USA, H-3401) and eosin (Harleco, Darmstadt, Germany, 200-12) to evaluate tissue morphology. Images were taken using an inverted microscope (Fisherbrand, Waltham, MA, USA, 03-000-013) with a digital camera attachment (Amscope, Irvine, CA, USA, MU503) at 40× magnification. Scale bars: 50 µm.
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8

Organoid Formation and Quantification

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COLON MAP samples that successfully formed organoids were dissociated and counted using a Bio-RAD TC20 automated cell counter and plated at 1,000 cells/well in 5 μL Matrigel domes in a 96-well plate. Organoids were imaged and counted using an inverted microscope (Fisherbrand) after 8 days in culture. Patient IDs were matched to histopathology results after compilation and tabulation of results. GraphPad Prism 9 was used for plotting and statistical analysis using unpaired t-tests.
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9

Transwell Migration Assay for Medulloblastoma

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The 24-well transwell chamber (Corning life science, corning, NY, USA) without matrix glue was used to detect the migrationof medulloblastoma cells. Approximately 1×105 cells were seeded into the upper chamber, and 500 μL DMEM was added to the lower chamber. After incubation at room temperature for 24 h, the cells were fixed with paraformaldehyde (PFA) for 30 min and stained with crystal violet for 20 min, then observed with an inverted microscope (Thermo Fisher). When the upper chamber was coatedwith matrix glue, and the invasion test could be performed in the same way.
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10

In Vivo Angiogenesis Assessment Using Matrigel Plug Assay

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Matrigel plug angiogenesis assay (Corning, NY, USA) was used to evaluate the in vivo anti-angiogenic effect of miRNA-124. The matrigel stock solution was thawed overnight at 4°C. A gel solution was prepared using a Matrigel stock solution and serum-free DMEM, and the solution was placed in a 96-well plate and then allowed to incubate for 2 hrs to cure. The cultured cells were collected and digested to prepare a single cell suspension under aseptic conditions, and the cell suspension was adjusted to a density of 1×105/mL. The cells were seeded in 96-well plates at 100 μL per well. The plates were incubated for 6–8 hrs in an incubator (5% CO2, 37°C), and the cells were visualized using an inverted microscope (Thermo Fisher Scientific) and photographed.
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