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25 protocols using fdu 2110

1

Heavy Metal Content Analysis

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The heavy metal content of raw materials and residues was determined. All samples needed to be dried in a freeze-dryer (FDU-2110, EYELA, Tokyo, Japan) and ground through a 200-mesh screen before analysis. The heavy metal content was measured by the method proposed by the Chinese Ministry of Ecology and Environment [62 ]. The metal concentrations were detected by inductively coupled plasma mass spectrometry (ICP-MS, Perkin Elmer NexION 300X, Waltham, MA, USA).
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2

Comprehensive Nutritional Analysis of Digesta Samples

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All digesta samples were freeze-dried at −50 °C (FDU-2110, EYELA, Tokyo, Japan). Before analyses, the diets and dried digesta samples were ground by an analytic mill processing to pass through a 0.18 mm screen. The diets and digesta samples were analyzed for gross energy, crude protein, and amino acids on a dry matter (DM) basis. The DM was determined by drying at 105 °C for 24 h (method 934.01; AOAC, 2005). The gross energy was determined using a bomb calorimeter (Parr Instrument Co., Moline, IL, USA). The concentration of crude protein was measured according to the method of AOAC (method 990.3; AOAC, 2005). The concentrations of amino acids were determined using an amino acid analyzer (L-8900, Hitachi, Tokyo, Japan). In brief, about 0.2 g sample was hydrolyzed by 6 N HCl containing 6 g/L phenol for 24 h at 110 °C in a glass tube sealed under vacuum. For the cysteine and methionine analyses, the samples were oxidized by performic acid for 16 h at 0 °C, and then the reaction was terminated by adding hydrobromic acid before acid hydrolysis. The concentration of chromium was determined by digesting the samples in concentrated nitric acid and perchloric acid, and the absorption was measured using a spectrophotometer at 440 nm (Beckman DU-800; Beckman Coulter, Inc., Brea, CA, USA). All analyses were performed in duplicate.
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3

Analysis of Seed Embryo Sugars

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The sugars were extracted according to a published protocol (Zhou et al., 2022 (link)). Samples were taken at different aging time points; the seed embryos were freeze-dried (FDU-2110, EYELA, Japan), then ground in a clean mortar, and put into an Eppendorf tube. A 200-mg aliquot of the sample was put into a 10-ml graduated centrifuge tube with the addition of 5 ml of 80% ethanol and placed in an 80°C water bath for 10 min, shaken three to five times in the middle of the process. Next, the supernatant was collected after centrifugation at 5,000g for 5 min. The above operation was repeated and the two supernatants were combined. The extracts were filtered through 0.22-μm water phase filters (Jinteng, China). Sugars were measured directly in the extract by HPLC using a Waters binary HPLC system (Waters 1525-2707, Milford, USA) equipped with a refractive index detector (2414, Waters, Milford, USA). Analytical conditions were as follows: column Agilent Hi-Plea Ca (8% cross-linked), 300 × 7.7 mm, 8 µm in diameter (Agilent Technologies, Inc., USA); column temperature, 85 °C; mobile phase, Milli-Q water; and flow rate, 0.6 ml min−1. Data were collected and processed by the Waters chromatography station DataApex. Sugars were identified by comparison with retention times and coelution of authentic standard solutions.
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4

Extraction and Characterization of Momordica charantia Powder

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M. charantia (variety: Lvbaoshi) was provided by the Vegetable Research Institute Guangdong Academy of Agricultural Sciences. Green and fresh M. charantia fruits were sliced into 3–5 cm sections after washing them and removing the seeds. Afterwards, the M. charantia slices were dried at 65°C for 20 h. The slices were crushed into powder using a 40-mesh sieve. The M. charantia powder was mixed with water at a solvent ratio of 1:15, and the mixture was then boiled and extracted for 2 h. The extract was filtered through a 100-mesh filter screen. Next, the filter residue was again extracted. The two filtrates were merged and concentrated in a vacuum rotary evaporator (Eyela N-1100, Eyela, Tokyo, Japan) at 55°C. The extract was then vacuum freeze-dried in a vacuum freeze dryer (FDU-2110, Eyela, Tokyo, Japan). The MWE powder was then stored at −20°C for further use.
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5

Controlled Enzymatic Enrichment of Crassostrea gigas Peptides

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Preparation of CAPs was by controlled enzymatic enrichment of peptides [19 (link)]: Freshly washed Crassostrea gigas were homogenized by high-speed shear, and 1000 U/g of protease was added to the homogenate and enzymatically digested for 3–6 h. After enzymatic digestion, the enzyme was inactivated at 100 °C for 10 min; the fractions with molecular weights less than 3000 Da were separated by ultrafiltration membranes (GC-UF0031 made of PES, GE, USA) under refrigerated temperature conditions. The fractions with molecular weights less than 3000 Da were spun concentrated (N-1300V, EYELA, Tokyo, Japan), freeze-dried (FDU-2110, EYELA, Japan) into powder, and set aside.
Then, dissolved in PBS buffer at 50–200 mg/mL, pH adjusted to 2.0, 7.4, 8.4, 9.4, 10.4 with a pH adjuster, vortexed self-assembly at room temperature for 30 min, followed by low-speed centrifugation to discard the supernatant and the precipitate was freeze-dried into powder to obtain the described CAPs.
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6

Freeze-Drying Gel Microstructure Analysis

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All samples were immediately frozen with liquid nitrogen and then freeze-dried using a freeze dryer (FDU-2110, EYELA, Tokyo, Japan). The freeze-dried gel samples were gold-sputtered and observed under the Zeiss Merlin scanning electron microscope (Carl Zeiss, Oberkochen, Germany) at magnifications of 100× and 500× to examine the microstructure of the freeze-dried gel.
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7

Fecal Microbiome DNA Extraction and Sequencing

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A fecal sample was collected at the participant’s home and transported to Nagoya University while maintained at 0 °C with ice packs in a thermal insulation jar as previously described8 (link). The fecal samples were freeze-dried using a freeze-dryer (FDU-2110, EYELA, Shanghai, China) and DNA was extracted from 20 mg of freeze-dried (FD) feces using the QIAamp PowerFecal DNA Kit (QIAGEN, Hilden, Germany) following the instructions of the manufacturer22 (link). The protocol was partially modified to use Lysing Matrix E Beads (MP Biomedicals, Irvine, CA, USA) with FastPrep-24 5G (MP Biomedicals) for three cycles at 6.0 m/s for 60 s instead of vortex mixing. Sequencing libraries were generated using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) according to manufacturer’s protocols, and index codes were added to attribute sequencing fragments to each sample. The library quality was assessed using TapeStation (Agilent, Santa Clara, CA, USA). Metagenomic sequencing was conducted using the HiSeq 2500 sequencing platform, HiSeq Rapid SBS Kit v2 and HiSeq PE Rapid Cluster Kit v2 (Illumina, San Diego, CA, USA) to obtain 3 Gbp per sample by 2 × 150 bp paired end-reads.
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8

Extraction of Ricini Semen Ethanol Extract

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Ricini Semen ethanol extract was prepared according to a previous study [62 (link)] with some modifications. Ricini Semen, purchased from Jiundang Oriental Pharmacy (Seoul, Republic of Korea), was crushed to a size of 5 mm or less. Thirty grams of the crushed seed was mixed with 300 mL of ethanol (catalog number: 000E0219, Samchun Chemicals) in a 500 mL round flask and incubated at 50 °C for 3 h while shaking at 30 min intervals. After the incubation, the solids were removed by filtration using Whatman qualitative filter paper Grade 1 (catalog number: 1002 110, Cytiva, Sigma-Aldrich). The filtered extract was then concentrated using a rotary evaporator (RV-10, IKA Korea Ltd., Seoul, Republic of Korea), and the residual ethanol was removed using a freeze dryer (FDU-2110, EYELA, SunilEyela Co., Ltd., Seongnam, Republic of Korea). The solid weight after lyophilization was 3.29 g. The extracted oil was stored at −80 °C.
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9

FTIR Spectroscopy of Freeze-Dried Latex

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The Fourier transform infrared (FTIR) spectrum was recorded in the wave-number range of 4000–500 cm−1 with a Nicolet 360 spectrophotometer in the spectral range of 4 cm−1 to 64 cm−1, with a resolution for each sample. Before a measurement, the latex containing LPs was freeze-dried under vacuum in a freeze (FDU-2110, EYELA, Tokyo, Japan).
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10

Multiherb Traditional Medicine C5E

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C5E consisted of ten traditional Chinese medicinal herbs. The proportions, manufacturing process and analyses of the major components were previously reported (8 (link)). C5E was prepared using 16.6% Panax ginseng (w/w; supplied from Kyung-dong market, Seoul, Republic of Korea), 16.6% Inonotus obliquus, 11.1% Pinellia ternata, 5.6% rhizome of Sparganium stoloniferum Buchanan-Hamilton, 5.6% Alpinia galanga, 5.6% Cinnamomum cassia, 5.6% Astragalus membranaceus, 11.1% Psoralea corylifolia L., 11.1% Tetradium ruticarpum and 11.1% Melia azedarach L. The medicinal herbs were obtained from the Oriental Medical Hospital, Dongguk University (Ilsan, Republic of Korea). C5E was prepared as follows: The dried and pulverized herbs were mixed and a 1 kg batch was soaked and slowly stirred overnight at 25°C with 3 l ethanol (40%). The ethanol extract was concentrated using a rotary evaporator to remove solvent, lyophilized at −80°C using a freeze-dryer (FDU-2110; Eyela) and reconstituted in Milli-Q water (18.2 MΩ; EMD Millipore) for in vitro studies.
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