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20 protocols using ab416

1

Astrocyte Isolation and Quantification

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After behavioral tests, rats were decapitated. PFCs were quickly separated, cut into pieces, digested by papain with 0.1% DNase. Cell debris was removed and all cells were enriched by Percoll (17-0891-02, GE Healthcare). The isolated cells were fixed by 1% PFA. The fixed cells were incubated with primary antibodies rabbit anti-GLAST1 (1:100, ab416, Abcam) and mouse anti-GLUT1 (1:100, ab40084, Abcam) in permeabilized (0.1% Triton, for total GLUT1 detection) or non-permeabilized (without Triton, for plasma membrane GLUT1 detection) condition for 1 h. Then, cells were incubated with secondary antibody Alexa Flour 488 goat anti-rabbit IgG and Alexa Flour 647 goat anti-mouse IgG for 0.5 h. The fluorescence signal was detected by flow cytometer (Attune NxT, Invitrogen). Astrocytes were identified by GLAST1 expression (Norden et al., 2016 (link)).
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2

Comprehensive Histological Analysis of Inner Ear

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Histological examination, whole-mount and section immunostaining and ISH were carried out according to standard procedures. Briefly, inner ears were fixed in 4% paraformaldehyde (PFA) for 1 hr at 4°C, dehydrated, and embedded in wax. Paraffin sections were generated at 6 μm. For ISH, tissues were fixed overnight. We used five embryos for each genotype at each stage for each probe and the result was consistent in each embryo.
Primary antibodies: anti-Sox2 (PA1-094, Thermo Fisher), -Myo7A (25–6790, Proteus and 138-1-s, DSHB), -Six1 (HPA001893, Sigma), -Atoh1 (Math1-s, DSHB), -p27kip1 (554069, BD Pharmingen), -Calretinin (MA5-14540, Thermo Fisher), -p75NTR (#07–476, EMD Millipore), -N-cadherin (610921, BD Bioscience), -E-cadherin (U3254, Sigma), -S100A (ab11428, Abcam), -GLAST (ab416, Abcam), -Pou4f3 (sc-81980, Santa Cruz), -Prox1 (AB5475, Millipore), -Acetylated tubulin (T7451, Sigma), -Cy3-, Cy2-, Cy5- and FITC-conjugated secondary antibodies were used. Alexa Fluor 488 or 350-conjugated phalloidin (A12379 and A22281, Life technologies) were used for actin staining. Hoechst 3342 was used for nuclear staining.
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3

Immunolabeling of Hippocampal Slices

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Hippocampal slices were washed 3 times with 0.01 M phosphate buffer saline (PBS) and fixed in 4% paraformaldehyde (PFA) for 1 h at room temperature (RT). At the end of fixation, the slices were washed 3 times with PBS and then stored at 4 °C in PBS containing 0.05% sodium azide until use. Prior to immunolabelling, slices were washed 3 times with PBS for 10 min, then incubated overnight with 1% Triton X-100 in PBS at 4 °C, followed by a blocking stage using 20% bovine serum albumin (BSA) diluted in PBS (0.01 M) and containing 0.1% Triton (PBS-T) for 3 h at RT. Slices were then incubated overnight with primary antibody diluted in PBS-T and 1% normal goat serum (NGS): rabbit anti-NeuN antibody (1: 200, Cell Signalling Technology, D4G4O # 24,307), guinea pig anti-GLT1 antibody (1:5000, Merck Millipore Chemicon International, ab1783), rabbit anti-GLAST antibody (1: 150, Abcam, ab416), or rabbit anti-GS (1:5000, Abcam, ab49873). Following washes in PBS-T, slices were incubated in appropriate secondary antibodies for 3 h at RT, namely goat anti-guinea pig Alexa-fluor 568 or goat anti-rabbit Alexa-Fluor 647 (both at 1:500, Invitrogen), in addition to the nuclear chromatin dye Hoechst 33,342 (1:500, Fisher, 11,544,876). Lastly, slices were washed in PBS-T (0.1%) and mounted in Fluoromount G (Invitrogen—REF 00–4958-02).
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4

Western Blot and Immunofluorescence Antibody Protocols

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All chemicals were purchased from Sigma-Aldrich (St Louis, MO, USA) unless otherwise indicated. For western blots, primary rabbit antibodies against xCT, EAAC1, GLAST or GLT1 (ab37185, ab124802, ab416 or ab41621 respectively) were obtained from Abcam, Cambridge, MA, USA. Anti-LAT1 (sc-34554) from Santa Cruz Biotechnology, Santa Cruz, CA, USA. Rabbit anti-NR2A, anti-NR2B or mouse anti-GAPDH (AB1555P or AB1557P, MAB374 respectively) from Millipore, Bedford, MA, USA. Rabbit anti mouse-β-tubulin (T4026) from Sigma-Aldrich. Secondary goat anti-rabbit antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). For immunofluorescence staining chicken anti-MAP2 (ab5392) from Abcam. Anti-rabbit Alexa Fluor 594 (A11039) and anti-chicken Alexa 488 (A21207) secondary antibodies were obtained from Life Technologies, Carlsbad, CA, USA.
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5

Immunofluorescent Staining of Astrocytes

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Cells were fixed in 4% PFA (n = 5 scaffolds/group). Samples were blocked with 5% goat serum, 1% BSA, and 0.05% Triton-X in PBS for 2 h, and then incubated with rat anti-GFAP (1:5,000, Life sciences, 13-0300, clone 2.2B10, Zoltewicz et al., 2012 (link)) and rabbit anti-EAAT1 (1:1,000, Abcam, ab416, Gunn et al., 2013 (link)), overnight at 4°C. Then, samples were incubated with dye-conjugated secondary antibodies (Alexa 488 and 647), goat anti-rat (H+L) (Molecular probes, A-11006) and goat anti-rabbit (H+L) (1:1,000, Molecular probes, A-11036). Nuclear DNA was stained with 4,6-diamino-2-phenylindole (DAPI) (1:1,000, SIGMA).
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6

Immunofluorescent Quantification of GLAST

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Glutamate/aspartate transporter (GLAST) and L-glutamate was evaluated by fluorescence microscopy using specific antibodies. Sections were incubated in blocking solution (3% BSA, Tween 0,05% PBS) for 1 h. at room temperature followed by incubation with primary antibody rabbit anti-GLAST (EAAT1) (1∶100, Abcam ab416, Cambridge, UK). After washing, sections were incubated with a fluorescent anti-rabbit ALEXA 594 as a secondary antibody (Life Technologies S.A, Madrid, Spain) in blocking solution for 1 h, washed, nuclei were stained with Hoechst and mounted in Mounting Medium Fluorescence (Prolong, Invitrogen) with a coverslip. Fluorescence intensity of images was quantified by ImageJ.
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7

Immunohistochemistry Protocol for Tissue Analysis

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Immunohistochemistry was performed on 50 μm tissue sections as previously described (Moldrich et al., 2010 (link)). Primary antibodies used: sheep anti-DRAXIN (1:250; AF6149, R&D Systems), mouse anti-human KI67 (1:500; 550609, BD Pharmingen), mouse anti-GAP43 (1:500; MAB347, Millipore), rabbit anti-GFAP (1:500; Z0334, Dako), mouse anti-GLAST (or EAAT1; 1:500; ab49643, Abcam), rabbit anti-GLAST (or EAAT1; 1:250; ab416, Abcam), chicken anti-LAMININ (1:250; LS-C96142, LSBio), rabbit anti-LAMININ (1:250; L9393, Sigma), rat anti-NESTIN (AB 2235915, DSHB), and rabbit anti-SOX9 (1:500, AB553, Merck). Secondary antibodies were Alexa Fluor IgG antibodies (1:500, Invitrogen) or biotinylated IgG antibodies (1:500 or 1:1000, Jackson Laboratories) used in conjunction with Alexa Fluor 647-conjugated streptavidin (1:500, Invitrogen) amplification. EdU labelling was performed using the Click-iT EdU Alexa Fluor 488 or Alexa Fluor 555 Imaging kits (Invitrogen) according to the manufacturer’s instructions. Cell nuclei were labelled using 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI, Invitrogen) and coverslipped using ProLong Gold anti-fade reagent (Invitrogen) as mounting media.
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8

Western Blot Analysis of GLAST Expression

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The cells were homogenized in the RIPA lysis buffer (Bigtime, China) containing a protease inhibitor cocktail (Beyotime, China) and PMSF (Bigtime, China). Proteins were separated on 12% SDS-PAGE gels (Sigma-Aldrich, St. Louis, MO, USA) and transferred to nitrocellulose filter membranes. Membranes were blocked in Tris-buffered saline containing 5% fat-free milk and incubated overnight at 4°C with antibodies against GLAST (1 :200; ab416, Abcam). The membranes were then incubated with horseradish peroxidase-linked secondary antibodies against rabbit IgG (1 : 5000; Invitrogen) for 1 h at room temperature in the dark. Bands were visualized by exposure to the Kodak X-ray film. Image analysis and densitometry were performed by ImageJ.
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9

Quantitative Western Blot Analysis of Glial Markers

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Western blot analysis was performed according to protocols as previously described (Lu et al., 2014 (link)). In brief, hippocampus tissues were separated and homogenized in lysis buffer. The equivalent amount of protein was subjected to SDS-PAGE gel (10–12%) and transferred to PVDF membranes (Millipore). The blots were probed with anti-GFAP (1:3,000, MAB360; Millipore), anti-GLAST (1:5,000, ab416; Abcam), anti-GLT1 (1:5,000, ab41621; Abcam), anti-EAAC1 (1:10,000, ab124802; Abcam), anti-glutamine synthetase (1:3,000, ab73593; Abcam), anti-Claudin-5 (1:2,000, 35–2500; Invitrogen), anti-GAPDH (1:5,000, 2118; Cell Signaling Technology,) and anti-β-actin (1:10,000, A1978; Sigma-Aldrich) at 4°C overnight, and then incubated with HRP-conjugated secondary antibodies. The proteins were visualized by an enhanced chemiluminescence detection system (Amersham Life Science). The density of protein bands was quantified using ImageJ software (US National Institutes of Health) and normalized to actin or GAPDH.
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10

Placental Membrane Protein Expression Analysis

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Frozen placental tissue (n = 11 AGA, 10 FGR) was homogenised and centrifuged as previously described52 (link). Membrane-enriched fractions were stored at − 80 °C for later Western blot analysis to detect LAT1, LAT2, SNAT5, EAAT1 and EAAT2. Proteins were separated by SDS-PAGE and transferred to Immobilon-FL PVDF membranes (Millipore UK Ltd., Watford, UK). Primary antibodies were: LAT1 (0.5 µg/ml; KE026; TransGenic Inc, Japan); LAT2 (2 µg/ml; ab75610; Abcam, Cambridge, UK); SNAT5 (1.4 µg/ml; ab72717; Abcam), EAAT1 (1 µg/ml; ab416; Abcam) and EAAT2 (2.69 µg/ml; ab178401; Abcam). β-tubulin (2 µg/ml; ab6046; Abcam) was used as a loading control. Bands detected at the predicted molecular weight (kDa) were validated by the inclusion of positive controls (MVM) during antibody optimisation. Negative controls were by omission of primary antibody. Immunoreactive species were detected with fluorescent-conjugated secondary antibodies (Li-COR Biosciences, Cambridge, UK) and membranes imaged using an Odyssey Sa Infrared Imaging System (Li-COR). Signal density was measured using Image Studio Lite (Li-COR). All signals were in the linear range of detection.
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