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9 protocols using anti cyclin d1

1

Protein Expression Analysis in Cell Extracts

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The cells or tissues were treated with RIPA lysate, properly mixed, centrifuged, and the supernatant was added to electrophoresis loading buffer. The separated proteins in the gel were transferred to PVDF membranes, coated with primary antibody overnight, incubated with secondary antibody the next day, and then exposed and developed using a gel imaging system. Primary antibodies used were anti-VDAC1 (A19707; Abclonal), anti-β-Catenin (A0316; Abclonal), phosphorylated β-catenin (AP1076; Abclonal), anti-Cyclin D1 (A0310; Abclonal), anti-GAPDH (A19056; Abclonal).
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2

Immunofluorescence and Immunoblotting Analysis

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Cells were cultured at a density of 1.5 × 105 cells/well on 8 mm coverslips in 12-well plates. After 48 hours, coverslips were fixed by ice-cold methanol, and incubated with primary E-cadherin (Abcam), Vimentin and β-catenin (Epitomics) antibodies prior to florescent-labeled secondary antibodies. Nuclear DNA was stained with 4′, 6-diamidino-2-phenylindole (DAPI) and coverslips were mounted with FluorSave reagent (CALBIOCHEM). Immunofluorescence images were taken by Olympus inverted fluorescence microscope and were outputted by PV10-ASW 1.7 viewer software. Immunoblotting was performed as follows: Proteins were extracted with lysis buffer and then quantified by the BCA method (KeyGen Biotech). Lysates were diluted in SDS sample buffer (KeyGen Biotech) prior to SDS-PAGE, and then transferred to a polyvinylidene difluoride membrane (Roche Applied Sciences). Membranes were immunoblotted overnight at 4°C with anti-SOX17 (Millipore), anti-CyclinD1 (Abclonal), anti-C-myc, anti-DKK1 (Cell Signaling Technology), anti-E-cadherin (Abcam), anti-SOX2, anti-β-catenin, anti-Vimentin and anti-Slug and anti-N-cadherin antibodies (Epitomics), followed by the appropriate second antibodies. The bands were exposed using Pierce ECL Western Blotting Substrate (Thermo Scientific). Gel densitometry (Bio-Rad) was used to quantify immunoblot signals on exposed film.
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3

Western Blot Analysis of Protein Targets

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Cells were lysed by iced radioimmunoprecipitation assay (RIPA) buffer (50mM Tris pH 7.4, 150mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 1mM ethylenediamine tetraacetic acid (EDTA), 0.1% SDS) supplemented with 1 mM phenylmethylsulfonyl fluoride (PMSF). Protein concentration was measured by bicinchoninic acid (BCA) assay (Beyotime, Shanghai, China). Protein samples were subjected to SDS-PAGE electrophoresis and then transferred to polyvinylidene fluoride (PVDF) membrane. After being blocked with 5% skim milk in Tris-buffered saline plus Tween 20 (TBST) for 1h, the membranes were incubated with primary antibodies at 4 ℃ overnight, and then incubated with corresponding radish peroxidase-conjugated secondary antibodies (Proteintech, Wuhan, China) for 1 h at room temperature. Western blot bands were detected via West Pico Super Signal chemiluminescent substrate (Pierce, Rockford, IL, USA) using ChemiDoc XRS Imaging System (BioRad, Hercules, CA, USA). SRSF1 and β-actin antibodies were purchased from Santa Cruz. Variants were detected with anti-VEGF (Abcam, No.ab1316), anti-CD44 (ABclonal, No. A1351), and anti-Cyclin D1(CST, No. 2926P) antibodies, respectively. For relative quantification, the integrated optical density (IOD) was estimated using ImageJ (NIH). Relative protein expression level was calculated as IOD Experimental/IOD Control.
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4

Western Blot Analysis of Cell Signaling

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Western blot assay were conducted according to previous description32 (link). The primary antibodies used include the following: anti-MCPIPI (#GTX110807, GeneTex, 1:1500), anti-cyclin D1 (#A19038, ABclonal, 1:1000); anti-RB (#25628–1-AP, Proteintech, 1:1000), anti-pRB(Ser780) (#9307, Cell Signaling Technology, 1:1000), anti-E2F1 (#12171–1-AP, Proteintech, 1:1000), anti-Flag-Tag (#T0003, Affinity Biosciences, 1:5000), anti-GAPDH (#60004–1-Ig, Proteintech, 1:5000), anti-β-actin (#60008-1-Ig Proteintech, 1:1000). The secondary antibodies used include HRP-conjugated goat anti-mouse antibody (#SA00001-1, Proteintech, 1:10,000) and HRP-conjugated goat anti-rabbit antibody (#SA00001-2, Proteintech, 1:10,000). The bands were detected with ECL reagent (Advansta, USA). Image J software was used to calculate the protein expression levels.
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5

Western Blot Analysis of ADORA2B Protein

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A549, NCl-H1299, and HBE cells were cultured as previously described (Cell Culture). Total protein was extracted using RIPA buffer (Solarbio, Beijing, China). Protein concentrations were measured using a BCA protein assay kit (Solarbio). Protein extracts (50 μg/well) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. The membranes were blocked with 5% skim milk for 2 h and incubated with anti-β-actin (Bioss, bs-0061R, Beijing, China), anti-ADORA2B (Bioss, bs-5900R), anti-cyclin D1 (ABclonal, A2708), anti-PCNA (Proteintech, 10205-2-AP, Wuhan, China), anti-N-cadherin (ABclonal, A0433), and anti-vimentin (ABclonal, A2584) antibodies overnight. The next day, the membranes were incubated with a HRP-conjugated secondary antibody and goat anti-rabbit IgG antibody (ABclonal) for 1 h. A western blot detection ECL kit (Advansta, Menlo Park, United States) was used to detect protein bands. Fold-changes in ADORA2B protein expression were normalized to those of β-actin.
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6

Immunoblotting Protein Expression Analysis in ESCC

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Whole cell extracts were prepared from ESCC and adjacent normal tissues and cultured cells by homogenizing cells in a lysis buffer [10 mM Tris-HCl (pH 7.5), 150 mM NaCl, 2 mM ethylenediaminetetraacetic acid (EDTA), 1% Triton X-100] containing a cocktail of protease inhibitors. The supernatant was collected after centrifugation at 12 000 g for 15 min, and subjected to Western blot as previously described [20] (link). The anti-IQGAP1 (1∶5000), anti-E-cadherin (1∶500) and anti-N-cadherin (1∶500) antibodies were purchased from BD Biosciences. The anti-cyclin D1 (1∶500), anti-cyclin B1 (1∶1000), anti-CDK1 (1∶1000) and anti-CDK4 (1∶500) antibodies were purchased from ABclonal Biotechnology. Densitometry was performed by Kodak Molecular Imaging Software.
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7

Quantifying Protein Expression Profiles

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Cells or tissues were homogenized in ice-cold suspension buffer (RIPA Lysis Buffer) supplemented with a proteinase inhibitor cocktail (Sigma-Aldrich). Briefly, the protein concentrations were determined using a BCA protein assay kit (Thermo Fisher). Equal amounts of protein were fractionated on SDS polyacrylamide gels, followed by immunoblotting with the following primary antibodies: anti-cyclin D1 (1:1,000, Abclonal,Wuhan,China), anti-MMP2 (1:1,000, Abclonal), anti-Mfn2 (1:1,000, Abclonal), anti-Erk1/2 (1:1,000, Abclonal), anti-phospho-Erk1/2(1:1,000, Abclonal), anti-Raf (1:1,000, Abclonal), anti-phospho-Raf (1:1,000, Abclonal), anti-β-actin (1:100, Abclonal), and anti-GAPDH (1:1,000, Proteintech). Membranes were then incubated with a peroxidase-conjugated secondary antibody, and specific bands were detected with a Bio-Rad (Hercules, CA) imaging system.
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8

Western Blot Analysis of β-catenin Signaling

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Cytosolic fractions were prepared as previously described [19 (link)]. Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes (Bio-Rad, USA). The membranes were blocked using SuperBlock Blocking Buffer (Thermo Fisher Scientific, USA) for 30 min at room temperature and probed overnight with anti-β-catenin (BD transduction Laboratories, USA), anti-active-β-catenin (Cell signaling Technology, USA), anti-cyclin D1 (ABclonal Technology, USA), anti-c-Myc (ABclonal Technology), anti-PARP (Cell Signaling Technology), anti-caspase-3 (Cell Signaling Technology), anti-cleaved caspase-3 (Cell Signaling Technology), and anti-actin (Cell Signaling Technology) antibodies. Membranes were then incubated with horseradish-peroxidase-conjugated anti-mouse IgG (Santa Cruz Biotechnology, USA) or anti-rabbit IgG (Santa Cruz Biotechnology), and reacted proteins were visualized using an enhanced chemiluminescence system (Santa Cruz Biotechnology).
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9

Biomimetic Oxidative Coupling Synthesis

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All compounds, including FZU-0025-065, were designed and synthesized through the last-stage functionalization of tetrahydro-β-carbolines (THβC) via biomimetic oxidative coupling catalyzation, and dissolved in DMSO. PI (propidium iodide, Cat #060M3521V) and sulforhodamine B (SRB) sodium salt (Cat#S9012) were purchased from sigma-Aldrich (St. Louis, MO).
The anti-AKT (#4685S), pAKT1 (#9018S), G3K3β (#9315), STAT3 (#9139S), pSTAT3 (#9131S), p21 (#2947S), α/β-Tubulin (#2148s), and pG3K3β (#9323S) were purchased from Cell Signaling Technology (Danvers, MA). The anti-CDK4 (#sc-749), CyclinB1 (#sc-245), ant GAPDH (#sc-32233) were purchased from Santa Cruz Biotechnology (Dallas, TX). And the anti-CyclinD1 (#A10757) and p27 (#610241) were purchased from ABClonal (Wuhan, CN) and BD Bioscience (San Jose, CA), respectively.
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