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20 protocols using cd56 bv510

1

Ectonucleotidase Expression on T-cell Subsets

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The expression of ectonucleotidases (CD39 and CD73) on αβDNT and activated Treg cells was evaluated by flow cytometry. The gating strategy for activated Treg cells was performed as previously described (5 (link)). PBMCs were stained with directly conjugated antibodies for 30 min at 4°C in the dark. The cells were washed before flow cytometry analysis. Antibodies used included anti-human CD3-BV785 (clone SK7), CD4-APC-fire750 (clone SK3), αβTCR-BV421 (clone IP26), CD56-BV510 (clone HCD56), CCR7 (CD197)-PE-cy7 (clone G043H7), HLA-DR-AF700 (clone L243), CD73-PE (clone AD2), CD39-BV605 (clone A1, BioLegend, San Diego, CA, USA), CD45RA-BV711 (clone HI100), CD38-BUV737 (clone HB7), CD25-PE-CF594 (clone M-A251), CD8-FITC (clone SK1), CD8-BUV395 (clone RPA-T8, BD Biosciences, San Diego, CA, USA), and the corresponding isotype controls. Data were acquired on a BD LSR Fortessa flow cytometer (BD Biosciences) and analyzed with FlowJo software (Tree Star, Ashland, OR, USA).
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2

Phenotypic Characterization of Activated T Cells

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Lymphocytes 5 × 106/mL were stimulated with 1 μg/mL PepMix in a CTL medium for 2 h and then for an additional 12 h in the presence of 1:1000 diluted Golgi plug (BD Biosciences, Franklin Lakes, NJ, USA). After incubation, cells were harvested with PBS and stained with the LIVE/DEAD Blue Dead Cell Staining Kit (Thermofisher) and antibodies to CD45RA-BB515, CD27-BV650, CD45RO-BV786, PD1-PECF594, CCR7-BV605 (BD Horizon, BD Biosciences), CD56-BV510, TIGIT (VSTM3)-PE/Cy7 (Biolegend, San Diego, CA, USA), CD8-AlexaFluor700 (Exbio, Prague, Czech Republic) and CD57—APC (BD Pharmingen). The cells were then washed with PBS, fixed using IC fixation and permeabilisation Buffer (eBioscience, San Diego, CA, USA) for 20 min and stained intracellularly with antibodies against IFN-gamma-PE, CD3-APCCy7 (Biolegend, San Diego, CA, USA) and CD4-PacificBlue (Exbio) in a permeabilisation buffer. The cells were washed and resuspended in a FACS buffer (FB-PBS containing 0.09% sodium azide, 1% BSA). The cells were measured using the BD LSR Fortessa 5 L flow cytometer (BD Biosciences). The obtained data were analysed by the FlowJo 10.5 software (TreeStar, Ashland, OR, USA). The gating strategy is shown in Figure 1.
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3

RNK001 Cytotoxicity Assay

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RNK001 potency was determined by challenging them with K562 cells. Briefly, 150.000 RNK001 cells were co-cultured with 100.000 K562 cells in the presence of CD107a-PECy7 (Biolegend, #328618) at 37 °C for 4 h. After 1 h, Brefeldin A (BD Bioscience, #5550229) was added. Next, cells were harvested and stained with CD56-BV510 (Biolegend, # 318340) and eFluor780 (eBiosciences, #65-0865-14) at 4 °C for 30 min. Cells were then fixed and permeabilized using eBiosciences Fix/Perm buffer (#00-5123-43, #005223-56 and #00-8333-56). Finally, cells were stained intracellularly for IFN-γ-FITC (BD bioscience, #554700) and Perforin-PE (Biolegend, #308106), washed, acquired on the Gallios flowcytometer (Beckmann Coulter) and analyzed using Kaluza V2.1.3.
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4

Phenotypic analysis of dendritic cells

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Frozen PBMC were thawed in RPMI-50% FCS, counted in Trypan blue, and 1 × 106 cells were stained with a viability dye (Viobility 405/520, Fixable Dye, Miltenyi-Biotech), Lineage antibodies (anti-CD3-BV510 (BD Biosciences), CD19-VioGreen (Miltenyi-Biotech) and CD56-BV510 (BioLegend)), and anti-CD14-BV650 (Biolegend), HLA-DR VioBlue (Miltenyi-Biotech), CD141-BV785 (BioLegend), CD16-PE (Beckman-Coulter), CD1c-BV605 (BD Biosciences), FcERI-PerCP-Vio700 (Miltenyi-Biotech), CD123-APC-Vio770 (Miltenyi-Biotech), CD11c-PE-Vio615 (Miltenyi-Biotech) antibodies (all antibodies are described in Additional file 1: Table S3). Samples were processed on the BD LSRFortessa cytometer (BD Biosciences). pDC and DC cells were identified as described by Mair et al. [49 (link)]. Data were analyzed using FlowJoTM version v10·8 software (BD Life Sciences).
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5

Comprehensive NK cell phenotyping

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PBMCs from subjects were resuspended in PBS buffer and were incubated with directly conjugated antibodies for 30 min at 4°C. The cells were washed with 1× PBS before flow cytometry analysis. Antibodies used included anti-human CD3-BV786, CD19-BVAPC-H7, CD16-BV711, CD69 PE-CF594, CD57-BV421, PD-1-APC, CD70-PE, CD160-AF488, 2B4-AF700, CTLA-4-PE, TIM-3-FITC, 7-AAD (BD Biosciences, San Diego, CA, USA), CD56-BV510, BTLA-PE-CY7, CD39-APC (BioLegend, San Diego, CA, USA), TIGIT-PE-Cy7 (Ebioscience, San Diego, CA, USA), along with the corresponding isotype controls. NK cells were gated as CD3CD14CD19CD56+CD16+, CD3CD14CD19CD56+CD16, or CD3CD14CD19CD56CD16+. Data were acquired with the LSR Fortessa flow cytometer (BD Biosciences) and analyzed with FlowJo software version 10.5 (Tree Star, Ashland, OR, USA).
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6

Phenotyping PfCSP+ Memory B Cells

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Cryopreserved PBMCs from the VRC 314 trial were thawed and stained for 30 minutes at room temperature in the dark with the following panel: 1:500 Blue LIVE/DEAD (Thermo Fisher Scientific L23105), 18 μg/mL IgA-Dylight 405 (Jackson Immunoresearch 109-475-011), 1:50 CD14-BV510 (BioLegend 301842), 1:50 CD3-BV510 (BioLegend 317332), 1:100 CD8-BV510 (301048), 1:50 CD56-BV510 (BioLegend 318340), 1:50 CD27-BV605 (BioLegend 302830), 1:40 CD21-BV711 (BD Biosciences 563163), 1:50 CD19-BV750 (BioLegend 302236), 1:125 IgD-PECy7 (BD Biosciences 561314), 1:20 IgM-Brilliant Ultraviolet (BUV)395 (BD Biosciences 563903), 1:125 CD38-Alexa Fluor 700 (BD Biosciences 560676), 1:40 IgG-allophycocyanin (APC)H7 (BD Biosciences 561297), 1:25 PfCSP-Brilliant Blue (BB)660, and 1:25 PfCSP-BUV737. The PfCSP probes were made by conjugating biotinylated PfCSP to streptavidin tagged with the relevant fluorescent dye. The cells were sorted using a BD FACS Aria II and analyzed with FlowJo software (Tree Star). Cells were gated on live CD19+CD14-CD3-CD8-CD56-CD21+CD27+IgA+/IgG+, with CD27++CD38++ cells excluded.
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7

Phenotyping of HSPC-derived NK Cells

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HSPC-NK cell phenotype was determined by staining for CD56-PE-Cy7 (Biolegend, #318318), NKG2A-APC (Beckman Coulter, #A60797), CD16-FITC (Biolegend, #302006), pan-KIRs-PE (Biolegend, #339506, 312606 and 312708), DNAM-1-FITC (BD, #559788), NKp46-PE (Biolegend, #331908) and NKG2D-APC (Biolegend, #320808) (CellGro vs NK MACS) or CD56-BV510 (Biolegend, #318340), CD45-BV421 (Biolegend, #368522), NKG2A-PE-Cy7 (Beckman Coulter, #B10246), DNAM-1-FITC (Biolegend, #337104), NKp46-PE (Biolegend, #311908), NKp44-PE (Biolegend, #325108), NKp30-APC (Biolegend, #325210) and NKG2D-APC (Biolegend, #320808) (GMP validations runs). Briefly, 200.000 cells were washed using PBS/0.5% BSA and incubated with antibodies in PBS/0.5% BSA at 4 °C for 30 min. Cells were then washed twice with PBS/0.5% BSA and resuspended in PBS/0.5% BSA containing Sytox Blue (1:5000 diluted, invitrogen, #S34857) for CellGro vs NK MACS experiments or 7-AAD (1:1000 diluted, Sigma, #A9400) for GMP validation runs. Cells were acquired on the Gallios (CellGro vs NK MACS) or Navios (GMP validation runs) flowcytometers and analyzed using Kaluza V2.1.3.
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8

Gemcitabine-Modulated NK Cell Activation

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HPC-NK cells were stimulated for 4 h with K562 or SKOV-3 cells that were 48 h pre-treated with/without 8.8 nM gemcitabine at an effector-to-target (E:T) ratio of 1.5:1 in the presence of CD107a-PE-Cy7 (Biolegend, 328618), and brefeldin A (added after 1 h, BD Biosciences, 555029). Optionally, anti-DNAX Accessory Molecule-1 (DNAM-1) (mouse IgG1, Biolegend, 338302), and/or anti-NKG2D (mouse IgG1, Biolegend, 320813) blocking antibodies or isotype control (mouse IgG1, BioXcell, BE0083) were added at 10 μg/ml. After 4 h, surface staining was performed using CD56-BV510 (Biolegend, 318340), and intracellular staining using anti-interferon (IFN)γ-FITC (BD Biosciences, 554700) and anti-perforin-PE (Biolegend, 308106) using a fixation/permeabilization kit (eBioscience, 00–5521-00) and permeabilization buffer (eBioscience, 00–8333) following manufacturer’s instructions. Dead cells were excluded using fixable viability dye eFluor780 (eBioscience, 65–0865-14) staining. Unstimulated cells were used for gating on CD107a and IFNγ positive cells.
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9

Profiling Natural Killer Cells in Sarcoidosis

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PBMCs were isolated from SLT patients (n = 16) and HCs (n = 17), and fresh cells were stained for CD45 (CD45-FITC), CD3 (CD3-BV711), CD56 (CD56–BV510), and CD16 (CD16-PE/Cy7; BioLegend, cat#302016), and analysed via FACS. CD45+CD3CD56+CD16+ (NK) cells as a proportion of CD45+ cells were calculated, as were the ratio of CD56+CD16+ to CD56+CD16 cells. PBMCs were also stimulated with IL-12 (50 ng/ml; Peprotech, cat#200-12) and IL-18 (50 ng/ml; Cambridge bioscience, cat#230-00229-10) in the presence of brefeldin A (5 μg/ml; Sigma, cat#B7651) for 4 h and stained for viability, CD45, CD3, CD56, and IFNγ. The proportion of viable CD45+CD3CD56+ cells expressing IFNγ was determined. Stimulation was also performed in HCs (n = 8) in media supplemented with 40 mM NaCl. The proportion of NK cells (CD45+CD3CD56+) was determined as was the expression of IFNγ by CD56+ cells, and compared between standard and high salt conditions.
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10

Isolation of SARS-CoV-2 Memory B Cells

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Cryopreserved PBMCs from COVID-19 convalescent donors were thawed and stained with DAPI (BD564907), CD14-BV510 (BioLegend 301842), CD3-BV510 (BioLegend 317332), CD56-BV510 (BioLegend 318340), CD19-ECD (Beckman Coulter IM2708U), CD21-BV711 (563163), IgA-Alexa Fluor 647 (Jackson Immunoresearch 109-606-011), IgD-PE-Cy7 (BD 561314), IgM-PerCP-Cy5.5 (BD561285), CD27-Alexa Fluor 488 (BioLegend 393204) and CD38-APC-Cy7 (BioLegend 303534). Stained cells were then sorted using the BD FACSAria IIIu in a BSL3 facility. This procedure involved gating out all but live CD19+CD14-CD3-CD56-IgM-IgD- cells, and then gating on IgA to yield purified populations of IgA-producing and IgG-producing memory B cells (MBCs).
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