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3 protocols using tcrβ percp cy5

1

Multi-Marker Immune Cell Analysis

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The following antibodies were used for staining: CD4 PerCp-Cy5.5, TCRβ PerCp-Cy5.5, and CD62L APC (TONBO); CD44 FITC, PD-1 (29F.1A12) PE-Cy7, CD69 PE-Cy7, CD5 PerCp-Cy5.5, CD8α Pacific Blue, and TCRβ Pacific Blue (BioLegend); CD44 PE-Cy7, CD8α (APC-eFluor 780), CD4 Qdot606, and Zap70 FITC (Life Technology). In vivo anti-PD (J43) antibody and control IgG were purchased from BioXcell. For intracellular flow cytometry, antibodies against phosphorylated ERKT202/Y204 (197G2), AKTThr308 (C31E5E), and ribosomal protein S6Ser235/236 (D57.2.2E) were purchased from Cell Signaling Technology.
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2

Multiparametric Flow Cytometry Analysis

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Single-cell suspensions from spleens, lymph nodes, and thymi were incubated with anti-CD16/32 at 5 µg/ml for 20 min on ice to block Fc receptors. Cells were stained with the following antibodies: CD4 PerCP-Cy55, TCRβ PerCp-Cy55, and CD62L APC (TONBO); CD44 FITC, PD-1 PerCP-Cy55, CD69 Cy7PE, CD25 PerCP-Cy55 (Biolegend); CD4 BUV395, and CD8 BUV737 (BD); Vα2 PE (phycoerythrin), Vα2 Pacific Blue, Vα2 FITC, FR4 Cy7PE, and CD73 BV605 (eBioscience); and CD25 BV605 (Life Technology). Dead cells were excluded using the live/dead fixable Near-IR death cell stain kit (Invitrogen). Intracellular Foxp3-FITC staining was done according to the manufacturer’s instructions (Life Technology). For detection of negatively selected thymocytes, caspase 3 PE (BD) was used as previously described (Breed et al., 2019 (link)). For intracellular flow cytometry, antibodies against phosphorylated ERKT202/Y204 (mAb 197G2), AKTS473 (Cell Signaling) were used as previously described (Hsu et al., 2009 (link)). Antibody against Alexa 647–anti-rabbit IgG was used as a secondary antibody to detect phosphorylation of ERK and AKT.
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3

Multiparameter Flow Cytometry Staining

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Cells were stained for 20 min on ice in MACS buffer (2% FCS in PBS with 1 mM EDTA) at 0.5 to 1 × 106 cells per well in 96-well round-bottom plates unless otherwise specified. All mAbs were purchased from BioLegend unless otherwise indicated. The following monoclonal antibodies were used: TCRβ–BV421, TCRβ–PerCP-Cy5.5 (Tonbo), CD23–PE-Cy7, CD23–Alexa Fluor 488, CD86–Alexa Fluor 647, CD86–PerCP-Cy5.5, CD21/35–Pacific Blue, B220–BV785, CD69–FITC (BD), CD93–APC (eBioscience), CD4–BV605, CD45.2–PE, CD45.1–BV605, lambda-1 light chain–biotin (BD) (followed by streptavidin–BV605), CD19–PE, and CCR7–biotin (followed by streptavidin–BV421). CCR7-biotin was stained for 1 h at room temperature followed by streptavidin and other surface markers on ice. Dead cells were excluded using Fixable Viability Dye eFluor780 (eBioscience no. 65-0865-18). For time-course experiments all samples were plated simultaneously, collected and kept on ice, and stained in parallel. Viability for 24- to 48-h cultures was determined by pregating on B220+ TCRβ--. All samples were run on a BD LSRii at 5,000 to 10,000 events per second. Flow cytometry data were analyzed using FlowJo (v10.8.0).
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