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4 protocols using cd28 cd28.2

1

Multi-Marker Immune Profiling Protocol

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Antibodies used in this study are as follows: CD3 (clone SP-34–2; BD Biosciences), CXCR5 (MU5UBEE; eBioscience), GagCM9 tetramer (NIH tetramer core), CD28 (CD28.2; eBioscience), CD95 (DX2; BD Biosciences), CD279 (PD-1; clone EH12.2H7; BioLegend), CD8 (SK1; BD Bioscience), Ki67 (B56; BD Biosciences), CD4 (L200; BD Biosciences), GrzB (GB11; BD Biosciences), perforin (Pf-344; Mabtech), FoxP3 (206D; BioLegend), HLA-DR (L243; BioLegend), IFNλ (B27; BD Biosciences), TNFα (MAb11; BD Biosciences), and IL-2 (MQ1- 17H12; BD Biosciences).
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2

Detailed T-cell Activation Assay Protocol

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RPMI 1640 (31870074), Dynabeads Human T-Activator CD3/CD28 for T cell expansion and Activation kit (1132D) were purchased from Thermofisher Scientific. Hyclone Fetal bovine serum was obtained from Fisher Scientific. Poly-L-lysine solution 0.1% (w/v) in H2O was obtained from Sigma (25988-63-0). The following anti-human antibodies were purchased from Biolegend, CD62L (DREG-56), CCR7 (G043H7), CD3 (UCHT-1), CD4 (A161A1), CD8 (HIT8a), CD2 (RPA2.10), CD28 (CD28.2), PD-1 (EH12.2H7), CD11a (TS2/4), mouse IgG1 isotype control (MOPC-21), CD58 (TS2/9), mouse IgG1 isotype control (MG1-45; 401402), CD45 (HI30), CD127 (A019D5), HLA-A2 (BB7.2), CD45RO (UCHL1). The following anti-human antibodies were purchased from BD Bioscience, CD45RA (HI100), CD127 (HIL-7R-M21), CD58 (1C3), CD2 (CD2.1) clone was a gift of D. Olive (Aix Marseille University). The following anti-human antibodies were purchased from eBioscience, CD8 (OKT8) and CD28 (CD28.2). Flow cytometry mAbs were used between 1-5ug/ml depending on how many cells were staining (i.e. between 5x103- 1x106). The following antibodies were purchased from Cell Signaling, pPLCγ1(pY783), pLAT(pY171), pSFK (pY416) (D49G4) and used at dilutions recommended by the company. The following anti-mouse antibodies were purchased from Biolegend, CD4 (RM4- 5), CD3 (145-2C11), TCRβ (H57-97). TCRβ (H57-97) Fab was obtained from Bio X Cell.
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3

Activation of NF-κB in PHA-stimulated T cells

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PHA blasts derived from patients’ PBMCs were IL-2 starved 16 h before the assay. 106 cells were distributed in a 96-well V-bottom plate and stained on ice during 10 min with anti-CD2 (RPA2.10; eBioscience), CD28 (CD28.2; eBioscience), or CD3 (OKT3; eBioscience) mAb as indicated (5 µg/ml each). Cells were washed twice with cold medium, and a polyclonal goat anti–mouse Ig (BD) was added to each well (5 µg/ml) to cross-link activating receptors. 40 ng/ml PMA was used in separate wells as a positive control. After 20-min incubation at 37°C, cells were washed once with cold 1× PBS and then stained for 10 min on ice using the Aqua Dead Cell Marker kit (Thermo Fisher Scientific). Cells were fixed for 10 min at 37°C using Fix Buffer I (BD) and stained for 30 min with mAb against CD3 (BW264/56; Miltenyi Biotec), CD4 (M-T321; Miltenyi Biotec), and CD8 (BW135/80; Miltenyi Biotec). After extracellular marker staining, cells were permeabilized for 20 min at room temperatures using Perm Buffer III (BD) and stained for 3 h at room temperature with an IgG2b isotypic control or anti–NF-κB p65-(pS259)-PE (BD). Cells were subsequently acquired on a FACS Gallios flow cytometer and analyzed with FlowJo software (v10; Tree Star).
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4

Isolation and Activation of CD8+ T Cells

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PBMCs were isolated from peripheral blood by Ficoll (Cat# P8900, Solarbio, China). Briefly, peripheral blood and PBS buffer were diluted at a ratio of 1:1 and fully mixed. Then, an equal volume of lymphocyte separation solution was added and the mixture was centrifuged at 500 g for 20 min at 4°C. The white membrane cells were carefully extracted and washed with PBS. Subsequently, the cells were centrifuged at 300 g for 10 min at 4°C. CD8+ T cells from PBMC of aGVHD patients and non-aGVHD patients were sorted using the CD8+ T cell isolation kit (Cat# 130-096-495; Miltenyi Biotec, Germany). The purity of the isolated cells was confirmed to be over 95% by flow cytometry. After incubation with CD3 (clone OKT3; Cat# 16-0037-85) and CD28 (CD28.2, 0.5 μg/mL; Cat# 16-0289-85) (eBioscience, USA) for 48 h in vitro, the sorted CD8+ T cells were further incubated with Galectin-9 recombinant protein (Cat# LG9-H5244, 5 μg/mL; ACRO Biosystems, USA) or PBS at 37°C for 24 h. After that, both the cells and culture supernatants were collected. Cell apoptosis was analyzed with flow cytometry, while cytokine levels in the supernatants were measured with ELISA.
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