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7 protocols using anti gfap z0334

1

Multimodal Analysis of Brain Tissue Sections

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Thick (100-200um) brain sections were prepared with vibratome and stored
in tissue freezing media (25% Glycerol, 30% Ethylene glycol, 1.38g/L
NaH2PO4, 5.48g/L Na2HPO4). The
primary antibodies used in this study as follows; anti-RFP/ tdTomato (MBS448092;
MyBioSource), anti-GFAP (Z0334; DAKO), anti-NeuN (MAB377, MilliporeSigma),
anti-Olig2 (AB9610, MilliporeSigma), anti-Sox2 (14-9811-80; eBioscience). The
secondary antibodies were as follows (all from Invitrogen): Alexa Fluor 568
anti-goat IgG, Alexa Fluor 647 anti-rat IgG, Alexa Fluor 647 anti-rabbit IgG,
Alexa Fluor 647 anti-mouse IgG. The nucleus was stained with DAPI.
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2

Immunofluorescence Staining of Alpha-Synuclein

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Cells were fixed with a 4% paraformaldehyde (PFA, Electron Microscopy Science), 4% sucrose (Sigma) phosphate buffered saline (PBS, Thermo Fisher) solution. Saturation and permeabilization were performed simultaneously with a 1% bovine serum albumin (BSA, Sigma) 0.2% Triton X-100 (Sigma) PBS solution for 30 min at RT. Antibodies were diluted in 1% BSA PBS solution. Primary antibodies were incubated overnight at 4 °C. C20R antibody from Abcam diluted at 1/1000 was used to stain endogenous aSyn, antibodies 59264 and 51253 from Abcam were used to stain phosphorylated aSyn (pSyn), anti-microtubule associated protein 2 (MAP2) HM-2 clone antibody from Sigma was used at 1/500, anti-ß-III-tubulin (TUJ1) clone SDL.3D10 from Sigma was used at 1/1000, anti-CD68 clone FA-11 from Abcam was used at 1/1000 to stain microglia, and anti-GFAP Z0334 from Dako was used at 1/500 to stain astrocytes. Secondary antibodies coupled to Alexa Fluor 488, 555 or 633 (Thermo Fisher) were used at 1/500 and incubated 1 hour and a half at room temperature. Hoechst probe (Sigma) was incubated at the same time as secondary antibodies, at a concentration of 1/5000. Cells were washed between each step with a 1% BSA PBS solution, and were stored in a 0.1% azide (Sigma) PBS solution for preventing bacterial growth.
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3

Quantification of Microglia and Astrocytes in Injured Rat Brain

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Rats were sacrificed through anesthesia 5 days post‐injury and perfused transcardially with PBS and 1% paraformaldehyde (PFA) successively. Fixed the brain tissues in 1% PFA for 12 h and 30% sucrose for 3 days at 4°C, then embedded in optimal cutting temperature compound (OCT), stored at −80°C. Sections were cut at 10‐μm thickness and prepared for immunofluorescence. The primary antibodies used were: anti‐GFAP (Z0334) (DAKO, Hamburg, Germany) and anti‐Iba1 (10904‐1‐AP) (ProteinTech). Secondary antibodies included: Alexa Fluor 488‐conjugated donkey anti rabbit (A‐21206) (Invitrogen, Carlsbad, CA, USA) and Alexa Fluor 555‐conjugated donkey anti rabbit (A‐31572) (Invitrogen). Slices were analyzed via confocal microscopy. Cell numbers of microglia and astrocytes in a HPF (high power field) of 200× view on the focus of lesion were counted artificially.
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4

Antibody Generation and Characterization for NDRG1

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Polyclonal anti-NDRG1 was generated in sheep against full length human NDRG1 and
antigen-affinity purified.32 (link),33 (link) A sheep antibody that
recognizes NDRG1 phosphorylated at Thr346, Thr356 and Thr366 (p3-NDRG1) was
raised against the nonapeptide RSRSHpTSEG, whose sequence is common to all three
phosphorylation sites, and was antigen-affinity purified.32 (link) Rabbit polyclonal anti-Sgk1 (S-5188) was from Sigma-Aldrich (Poole,
Dorset, UK), characterized in our previous report.20 (link) Rabbit polyclonal anti-GFAP (Z-0334) and mouse monoclonal anti-CD31
(clone JC70A) were from Dako (Ely, Cambs., UK).
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5

Antibodies and Cytoskeleton Modulators

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Restriction enzymes and buffers were from Promega. Anti-vimentin antibodies were: mouse monoclonal V9 clone (sc-6260) and its Alexa-488 conjugate from Santa Cruz Biotechnology, and mouse anti-vimentin monoclonal antibody (V5255) from Sigma. Anti-actin (A2066) and anti-Hsp70 (H5147) were from Sigma, and anti-α-tubulin (ab52866) and anti-desmin (ab15200-1) from Abcam. Anti-GFAP (Z0334) was from Dako. C3 transferase toxin was from Cytoskeleton. Latrunculin A and jasplakinolide were from Santa Cruz Biotechnology. HNE and PGA1 were from Cayman Chemical. 4,6-Diamidino-2-phenylindole (DAPI), cytochalasin B, nocodazole, blebbistatin, and ritonavir were from Sigma.
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6

Stepwise Differentiation of Stem Cells

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When the density of the cells reached 80%, the cells were digested and collected. The differentiation medium from the first stage (90% IMDM + 10% FBS) was used to suspend the cells in low-adherent 35 mm culture dishes. The embryoid body formed at 6–7 days. The embryoid bodies were collected and centrifuged. Cells were resuspended in the second-stage differentiation medium (90%DMEM + 10% FBS) and plated into four-well plates for adherent growth. After 3 weeks of culture, the differentiated cells were identified via immunofluorescence staining, with the specific antibodies of three germ layers. The antibodies used in this experiment included anti-α-SMA (ab244177, Abcam, Cambridge, MU, USA), anti-AFP (MAB1368, R&D Systems, Minneapolis, MN, USA) and anti-GFAP (Z0334, DAKO, Copenhagen, Denmark).
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7

Immunofluorescent Labeling of Mouse Brain

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Mice were perfused in PFA 4% in PBS and brains dissected and cryoprotected in 30% sucrose solution (in PBS) overnight at 4C. After sectioning, floating brain sections (50 µm) were collected in PBS, blocked 30 min at RT in blocking solution (10% normal donkey serum, 0.1% Triton X-100 in PBS) and incubated overnight at 4°C with primary antibodies. Sections were then washed three times with PBS and incubated with secondary antibodies in PBS for 2 hr at RT. Sections were washed again three times in PBS and stained with DAPI (Invitrogen) for 5 min at RT and imaged using Zeiss LCI 510 Meta confocal microscope. Primary antibodies were: anti-Rbfox1 (1D10, Millipore), anti-GFAP (Z0334, Dako). Secondary antibodies were: donkey-anti-mouse Alexa Fluor 488 (A21202, Invitrogen) and donkey-anti-rabbit Alexa Fluor 555 (A31572, Invitrogen).
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